Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma17g00376 | ATGGCGTCATCTGTTCATTCGAACTCCGATCGCGCGCGGGAGTCTTCAAGGAGGCAGAAGAAGAAGAAAAGCCACGGAAACAGAGATCATCATCAAAACCAGAACCATATTAAATGGAAGTCTCAAGCGCAGCAAGAAATTTACTCGTCCAAGCTGGTCCGAGCATTGAATCAAGTGAGGCTCAGTCCTCCGAACGAGGGGCCGCGCCGCGGCAGAGCCGTACGCGAGGCCGCTGACAGAGTCCTCGCCGTCGCTGCCAAGGGGAGAACCAGGTGGAGCCGAGCCATCTTAAAGAACAGGCTGAAACTCAAATTCAGGAAGCCGAAAAGACAGAGATCGGCATCCACCGCCGGAAACAACCGCTCAAAGAAACCTAGAGTTAGCGTATTGCGGTTGAGAGGGAAATCCTTACCGGCGGTACAAAGGAAAGTTAGGGTTCTTGGACGGCTAGTTCCCGGTTGCCGGAAAGAACCGTTGCCGGTTATCCTGGAAGAGGCTACCGATTACATAGCTGCACTTGAAATGCAAGTTCGAGCCATGAGTGCCCTCGCCGAGTTGCTCTCGGCCTCAACTTCTGCCGCAGGCTCTAGCTCCGCCCCACCAAACTGA | 609 | 54.35 | MASSVHSNSDRARESSRRQKKKKSHGNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVRLSPPNEGPRRGRAVREAADRVLAVAAKGRTRWSRAILKNRLKLKFRKPKRQRSASTAGNNRSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSAPPN | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 2094890 | 2095498 | + | CmaCh17G003760.1 | Cma17g00376 | 312271 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma17g00376 | 202 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 14 | 201 | IPR044660 | GO:0006355 | |
| Cma17g00376 | 202 | MobiDBLite | consensus disorder prediction | 103 | 128 | - | - | |
| Cma17g00376 | 202 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Cma17g00376 | 202 | PANTHER | TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 | 14 | 201 | - | - | |
| Cma17g00376 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 143 | 190 | IPR036638 | GO:0046983 | |
| Cma17g00376 | 202 | CDD | bHLH_AtIBH1_like | 129 | 184 | IPR044549 | GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma10g01164 | Cma-Chr10:8345872 | Cma17g00376 | Cma-Chr17:2094890 | 2.24E-51 | dispersed | |
| Cma12g00995 | Cma-Chr12:7949697 | Cma17g00376 | Cma-Chr17:2094890 | 2.17E-09 | dispersed | |
| Cma14g01583 | Cma-Chr14:11891942 | Cma17g00376 | Cma-Chr17:2094890 | 1.34E-84 | wgd | |
| Cma17g00376 | Cma-Chr17:2094890 | Cma05g01068 | Cma-Chr5:8470923 | 3.62E-43 | wgd | |
| Cma17g00376 | Cma-Chr17:2094890 | Cma06g01569 | Cma-Chr6:9819218 | 4.99E-82 | wgd | |
| Cma17g00376 | Cma-Chr17:2094890 | Cma08g01285 | Cma-Chr8:7781060 | 1.42E-125 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma17g00376 | - | - | csv:101220618 | 312.768 |