Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00379 ATGGAGGAGGTGAAGAAGGAAGAAGAATTGAGAAAAGGCGATCAGAATTTGATGGGAAATTCCGGATTGTTATTCGACATCCCATTAATGGATTTATTGGCCGGACAAGATTTCACCCCTTCCTTGTTCGAACTCTTGTCGGCTGCGCCACCCACTACCACTCTTCCTCCGCCGTCCTCCGCCGTGCCTGAGTCATCCGAAGTTCTCAACACCCCTCCTACTCCCAACTCCTCCGTCTCTTGCTCCTCCAATGAAAAAGCTTTCGACGCCGACGACGGCGATCTCCGGGAGAAATCCCCTTTCAACAAGCAATTAAAAGCGAAAAAAAAGAATCAAAAAAGGATAAGAGAGCCGAGATTTGCGTTCATGACAAAAAGCGAAGTGGATCATCTCGACGACGGCTATAGATGGCGGAAATATGGCCAAAAAGCCGTTAAAAACAGCCCTTATCCTAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTTAAGAAGCGTGTCGAACGTTCCTCCGATGACCCTTCCGTCGTCGTTACCACTTACGAAGGCCAACACATCCATCAAAGCCCAATCATGCCACGTGGAGCTTTAACAGCCGCCGCCGCCTTCGCCTCACCGCAACCGCCTCTTGTTTTCCCACAGCCGCAATATACGTACACTCCGGCGCCGCCAGTGGATGTCCGATTTGATGCGGCGTTTCATAGTTTTGGAGAAGAACGACGTCGTATTGAGGGATCTTTCCAAGACCATGGCCTTCTGCAAGATATGATCGTACCGTCCTCCGCCTTACACATCCCGGAAGAAGAATAG 813 50.8 MEEVKKEEELRKGDQNLMGNSGLLFDIPLMDLLAGQDFTPSLFELLSAAPPTTTLPPPSSAVPESSEVLNTPPTPNSSVSCSSNEKAFDADDGDLREKSPFNKQLKAKKKNQKRIREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHIHQSPIMPRGALTAAAAFASPQPPLVFPQPQYTYTPAPPVDVRFDAAFHSFGEERRRIEGSFQDHGLLQDMIVPSSALHIPEEE 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2109793 2110780 + CmaCh17G003790.1 Cma17g00379 312274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00379 270 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 217 IPR044810 GO:0003700
Cma17g00379 270 SUPERFAMILY WRKY DNA-binding domain 123 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma17g00379 270 SMART WRKY_cls 131 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma17g00379 270 Pfam WRKY DNA -binding domain 132 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma17g00379 270 MobiDBLite consensus disorder prediction 52 113 - -
Cma17g00379 270 ProSiteProfiles WRKY domain profile. 126 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma17g00379 270 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 54 217 - -
Cma17g00379 270 MobiDBLite consensus disorder prediction 59 85 - -
Cma17g00379 270 Gene3D WRKY domain 118 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma17g00379 270 MobiDBLite consensus disorder prediction 87 104 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g01581 Cma17g00379 CCT
Cma06g01571 Cma17g00379 CCT
Cma06g01571 Cma17g00379 ECH
Cma14g01581 Cma17g00379 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00279 Cma-Chr1:1325486 Cma17g00379 Cma-Chr17:2109793 1.68E-52 dispersed
Cma03g01052 Cma-Chr3:7258119 Cma17g00379 Cma-Chr17:2109793 3.06E-36 dispersed
Cma11g01514 Cma-Chr11:9902931 Cma17g00379 Cma-Chr17:2109793 1.23E-37 dispersed
Cma11g01961 Cma-Chr11:12851050 Cma17g00379 Cma-Chr17:2109793 6.43E-50 dispersed
Cma12g00093 Cma-Chr12:370354 Cma17g00379 Cma-Chr17:2109793 4.13E-47 dispersed
Cma12g00655 Cma-Chr12:3467830 Cma17g00379 Cma-Chr17:2109793 4.12E-32 dispersed
Cma14g00727 Cma-Chr14:3641445 Cma17g00379 Cma-Chr17:2109793 1.77E-37 dispersed
Cma17g00379 Cma-Chr17:2109793 Cma05g00441 Cma-Chr5:2013965 1.90E-47 dispersed
Cma17g01021 Cma-Chr17:7412849 Cma17g00379 Cma-Chr17:2109793 1.33E-44 dispersed
Cma20g00259 Cma-Chr20:1265843 Cma17g00379 Cma-Chr17:2109793 2.33E-37 dispersed
Cma20g01105 Cma-Chr20:8639205 Cma17g00379 Cma-Chr17:2109793 8.00E-36 dispersed
Cma03g00420 Cma-Chr3:4495889 Cma17g00379 Cma-Chr17:2109793 3.69E-22 transposed
Cma14g00940 Cma-Chr14:4878868 Cma17g00379 Cma-Chr17:2109793 2.98E-51 wgd
Cma14g01581 Cma-Chr14:11876011 Cma17g00379 Cma-Chr17:2109793 8.38E-68 wgd
Cma17g00379 Cma-Chr17:2109793 Cma06g01571 Cma-Chr6:9833175 2.42E-59 wgd
Cma17g00379 Cma-Chr17:2109793 Cma08g01289 Cma-Chr8:7800804 4.12E-78 wgd
Cma17g00379 Cma-Chr17:2109793 Cma08g00480 Cma-Chr8:2725379 1.71E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36646 PF03106 WRKY 2.40E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00379 - - csv:101205991 342.813