Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00380 ATGAACCATCAAGACAGTCGCTGGAGCCCCAATAACTTCCGTGGCGGCGTTGCCGGAGGTAACCGTCGGCCTTTCGACAGCCCGCCGCGCTTCTCTACTCCCGGTGCTGCTAATTTTCGCCCAATGGGAACTGGCGGGGGGTTCCGTCCAATTCCTGGTACTGGCGGTGGTTTTGGGTCCAGTTTCCAGCCGCTTCCTGTTGCAGGACAGAAACGGGGCTATCCTTTCGCCGGCCGTGGAAGTTCTCCAGATCATTCGGACAGAAGCAGTTTTGCCAAGCTGTTTGTTGGATCCGTTCCAAGGACAGTTACAGAAGAAGATGTGGTGAGAACAAGTAGGACAAATGTCTTTCTTGGCAAGCTAGTTAGTGGTAGGATTCGCCCATTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGATGTTGTTTTGTAAAATATACAACCCCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCAGGCCCAATTCAAGTTCGATATGCTGATGGAGAGCAGGAGCGTCTCGGTGCAGTTGAGTACAAATTGTTTGTTGGTTCATTAAATAAACAAGCCACAGAAAAAGAAGTCAAGGAAATCTTTTCTCCATATGGAGTAGTTGACGATGTTTACCTCATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACAAAAGGATATGGCACTGGCGGCTATAAATGCACTTAATGGAAGGTTTACAATGGGAGGTTGTGATCAACCATTAAGCGTTCGCTTTGCTGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCACTCCTGCATTTGGAGGTCCGGGTTTTGGTTCTCGCTTTCAAGCACCAGGTCCGAGACCAATGCCTAATTTTGGTGAATTTATGGGTGATCGAGTTCCAATTGATGTACGAGGTTTCAGGCCACCTGTTGATGCTGGTGCTTTTCCCTTTGGGGGTCAGTTGCCTCCTAGGTCCAGTGAAATGGGACTGCCTTTGAACTTGGGTGGTCCTGGTAGTGGGTTTAGAGGTTCCAATCCTGGGTTAGCCTCTCCAGCATCCTCTGCTTCTCAACAGTCTGCCAGCCAGCATCCATCACTTGGCCTCCAAGCGTCGCCCGTGCTAAAGGCCGTTCAGTCAACAACACAGTTGCCACCTTCAAGTCAATTGCACCCTCATGGTCCTTCCTATTCTCAGCCACATTCAACTGCAGCATTAGCACAACAGCATAATCAACCACAAATTTTCAACTCTTCTGGTCAACTGCCATTCAGTCTGCCCGCACCTTCCCAAGAGTTACCTAGCATTGGTGCACAGTTTCCGGTATCTCAGGCTATGGTCCAGCCGGGTGCCTCATCAGCTGCCCCTAATCAACAGCAACGTCCTACACCGATTCAGCCACGGCAGAATTCACCTTCTCAGTTAGCACACATGTTGTCACAACAAAAACAAACTCTCCATGCTAGTTTTCAGTCTTCCCAGCAGGCATTCTCTCAGCTACAGCAGCAGTTGCAGTCGATACAACCATCGAATCAAAGCTCAACGTTGCAGCCGAGTTCCCGGACTATTAATCAGCAGTCTCACTGGACAGGGGTTGTGCCACACACAGCTACCAGTGCCACTTCTGCAACATCAGATACACATAAATCTACAGTTCCTCCTGTAGCTATAAATACCAGCAATTGGACAGAGCACACTTCTCCTGATGGTTATAAATACTATTATAATAGTGTTACTGGTGAGAGTAAGTGGGAGAGACCTCAAGAGCTTTCGGCGATCGAGCAACAACAAAAGCCACCAGTAATGCAGCCTCTTAACCAGTCACGTCCTCAACTACTACCTACCCAGCAACTCTCTCAAACTCCCCAAGCCCAGCTTCAAACTCGGTTCCAGACACCGACGCCCCACCCTCAGCTGGTACAGCAACCTTCATTTCATTCACAGGAAGGCACTTATACAAAATTGCAGACAGCTAATAGCTCGGTAAATGATCCTACTCGCTTCCACCAGGGACTTCAAGCAAGTCATGAATGGGCATGGAAGAATAAATAA 2121 48.37 MNHQDSRWSPNNFRGGVAGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTGGGFGSSFQPLPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDVVRTSRTNVFLGKLVSGRIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTPEEADRAIRNLHNQHTLPGGAGPIQVRYADGEQERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGVVDDVYLMRDEMKQSRGCGFVKYSQKDMALAAINALNGRFTMGGCDQPLSVRFADPKKPRSGDSRGTPAFGGPGFGSRFQAPGPRPMPNFGEFMGDRVPIDVRGFRPPVDAGAFPFGGQLPPRSSEMGLPLNLGGPGSGFRGSNPGLASPASSASQQSASQHPSLGLQASPVLKAVQSTTQLPPSSQLHPHGPSYSQPHSTAALAQQHNQPQIFNSSGQLPFSLPAPSQELPSIGAQFPVSQAMVQPGASSAAPNQQQRPTPIQPRQNSPSQLAHMLSQQKQTLHASFQSSQQAFSQLQQQLQSIQPSNQSSTLQPSSRTINQQSHWTGVVPHTATSATSATSDTHKSTVPPVAINTSNWTEHTSPDGYKYYYNSVTGESKWERPQELSAIEQQQKPPVMQPLNQSRPQLLPTQQLSQTPQAQLQTRFQTPTPHPQLVQQPSFHSQEGTYTKLQTANSSVNDPTRFHQGLQASHEWAWKNK 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2115307 2125582 - CmaCh17G003800.1 Cma17g00380 312275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00380 706 Gene3D - 196 288 IPR012677 -
Cma17g00380 706 Gene3D - 79 195 IPR012677 -
Cma17g00380 706 CDD RRM2_FCA 202 281 IPR034645 -
Cma17g00380 706 PANTHER TRANSFORMER-2-RELATED 59 678 - -
Cma17g00380 706 SMART rrm1_1 202 277 IPR000504 GO:0003723
Cma17g00380 706 SMART rrm1_1 93 187 IPR000504 GO:0003723
Cma17g00380 706 MobiDBLite consensus disorder prediction 1 43 - -
Cma17g00380 706 SUPERFAMILY RNA-binding domain, RBD 201 306 IPR035979 GO:0003676
Cma17g00380 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 268 IPR000504 GO:0003723
Cma17g00380 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 175 IPR000504 GO:0003723
Cma17g00380 706 SUPERFAMILY WW domain 584 616 IPR036020 GO:0005515
Cma17g00380 706 ProSiteProfiles WW/rsp5/WWP domain profile. 583 612 IPR001202 GO:0005515
Cma17g00380 706 MobiDBLite consensus disorder prediction 403 548 - -
Cma17g00380 706 MobiDBLite consensus disorder prediction 338 390 - -
Cma17g00380 706 MobiDBLite consensus disorder prediction 459 548 - -
Cma17g00380 706 CDD WW 583 612 IPR001202 GO:0005515
Cma17g00380 706 Pfam WW domain 583 610 IPR001202 GO:0005515
Cma17g00380 706 Gene3D - 564 631 - -
Cma17g00380 706 SUPERFAMILY RNA-binding domain, RBD 77 195 IPR035979 GO:0003676
Cma17g00380 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 281 IPR000504 GO:0003723
Cma17g00380 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 191 IPR000504 GO:0003723
Cma17g00380 706 MobiDBLite consensus disorder prediction 403 451 - -
Cma17g00380 706 SMART ww_5 580 612 IPR001202 GO:0005515
Cma17g00380 706 MobiDBLite consensus disorder prediction 280 311 - -
Cma17g00380 706 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 59 678 - -
Cma17g00380 706 MobiDBLite consensus disorder prediction 370 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00380 - - - cmos:111460217 1263.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01286 Cma-Chr8:7784288 Cma17g00380 Cma-Chr17:2115307 0 dispersed
Cma17g00380 Cma-Chr17:2115307 Cma17g01138 Cma-Chr17:7920872 7.09E-47 dispersed
Cma14g00942 Cma-Chr14:4882658 Cma17g00380 Cma-Chr17:2115307 1.42E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00380 Cma_Chr17 FPKM 8.592731 10.048396 13.505117 14.033189 15.837274 15.996916 15.873495 18.563429 17.034668 16.974651