Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00384 ATGGATACTCTTCTTTTCTCCCCTTCTTCTTCTTCAGCTTATCCTTCTCTCAAGGCTCCCACTCTGTTGCCTCGAAATGGCTTCTGGGGATCACGAAGCCTTTTCTCTGATTTTCCGAATGTATGCTCTTCCTTCCGCACTCTCAATCTACCGACTGGATTCGCAAGAAAATCCGCAATTGTCGCGGCGAAGAAAACCAATACTAACAAGGACGACAGCCACCGTTCTGTTCCCAAACCTGATGAGACTACCGGCTTCTTCCCTGAAGCTGTTCTGCTTAAGGAGAAAAGAGTTGCTGAAGATGGTCAATTTCTCCCCGAATTTGCTGATGCGGAAGAAGAAAAGCTTTATGAATATTTGAACCTTCAGTTGGAAAGTGAATCGAAAGTTCTACAAATGCGTCACTATGAGGTAGTCTTCTTAATTCACGAGAAGAACGCAGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCAAGGTTTTATAAGGGAGAAGAAAGGGAAGATATGGAGACTGAGTGACTGGGGAATGCGAAGGTTGGCTTACAAGATAAAGAAAGCCAATTATGCACATTACATATTGATGAATTTTGAACTGGAGGCCAAATGGATTAATGAATTTAAGAGCATGTTAGATATGGATGAAAGAGTAATTCGACATCTTGTGATTAAGAGGGATGCTGCTATCACTGAAGATTGCCCTCCACCTCCCGAGTTTCATACCCTTCGTGCAGGAGATGACTACAGTGAAGAAGAAGAGGAAGAGGACATGGATGATTATGATAGTGAGGATTCACTGGATTGGGATGGTGAAGATGAGTTGGATGATTATGGTGATGATATTGAAGATGGGATTATTATTGTCGACGATGACGATGACAGCGGAAGTAAGGCCATCAAATCTGCTGCAGGTAACAGAGGCTTGAGAAATGGAACTAAAAAATAA 942 42.36 MDTLLFSPSSSSAYPSLKAPTLLPRNGFWGSRSLFSDFPNVCSSFRTLNLPTGFARKSAIVAAKKTNTNKDDSHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEEKLYEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHTLRAGDDYSEEEEEEDMDDYDSEDSLDWDGEDELDDYGDDIEDGIIIVDDDDDSGSKAIKSAAGNRGLRNGTKK 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2139260 2141369 - CmaCh17G003840.1 Cma17g00384 312279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00384 313 CDD bS6 135 224 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cma17g00384 313 Gene3D - 128 230 IPR014717 -
Cma17g00384 313 PANTHER 28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL 96 249 - -
Cma17g00384 313 Pfam Ribosomal protein S6 135 223 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cma17g00384 313 ProSitePatterns Ribosomal protein S6 signature. 175 184 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cma17g00384 313 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 96 249 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cma17g00384 313 Hamap 30S ribosomal protein S6 [rpsF]. 133 226 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cma17g00384 313 SUPERFAMILY Ribosomal protein S6 133 233 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cma17g00384 313 MobiDBLite consensus disorder prediction 231 313 - -
Cma17g00384 313 MobiDBLite consensus disorder prediction 247 288 - -
Cma17g00384 313 TIGRFAM S6: ribosomal protein bS6 133 225 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00384 - - - csv:116404473 400.593
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g35 . . Bda03g01193 . . . Bma04g01115 . . Cmo17g00373 . . . . . . . . . . . . . . Cla06g00412 . Cec06g0441 Cco06g0440 Clacu06g0422 Cmu06g0421 . . Cone15ag0715 . . . Csa06g01854 Chy11g01587 . . . . . . . . . Sed05g1232 . . . Cma17g00384 . . Cpe12g00335 . Bhi12g01952 Tan06g2784 Cmetu11g0368 . . . Lcy12g0869 . . . . . . . Lsi09g01509 . . Cme11g02096
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011574 3 1 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 0 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00384 Cma_Chr17 FPKM 8.419223 10.061511 34.324039 32.436588 107.386848 100.676682 109.117386 19.390028 19.074188 19.064465