Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00385 ATGGCTCGTAAGGGTAACCAACAGAAAACAGGGTCCGAGCGCCATGCATCAAACAATAAAAAGAGAGGTTCAGACTTGCAGTCCAAGGGACAGGGGAGAGCACGAGAGATAAAGGTATTCCCCGGAGAGGTACTACCAAATGACAACCACCATAGTAGAGCCTTTGAGGAAGGTATGGTGAATCAAAACTCTGGGGAGGGTATAAAGAATCTAAAAAAATTTGAGAAGTCCTTGAGAAAAGAAAAACAAGGAGTGGAAGGATTTCATTCTCCAGAGGAGCCAACATGTCTCCCCGAAGAATCCGGTAACTGCAATGGAAATAATGAGGATTCTAGTATAGGAGAACAGTACAATGGGTCTGATAAGGTGCAGGATCCTTTAGATGGTAGTTTCAGCTGCTTTTTGAACGGAGAACACATCAGAAATGTGATGGGTAATCTAAAATTTTCAGATAATGTTTTCGTGAAAAGCTTCTTGGAATCTATGTCATCGGTATTGGAAGCAGCCCATGTGTTGCTGGAGCAACAAAGACCTTTGTTGAATTCTATGAAGAACAACTTGCTAAACGCAAGTGCCTATGTTGGAAAGAAGATTATGAAAGCATATCCCATTGTTTTGAAATGGATGATGCATTTTGGGAATGTAATGCTTCTTTTATCAATTGTATGGTTGGACTGTGCCCTCAGGGGCATCGATTCCTTTGTACGTATGGGTACAACATCCTTCTTCTCAGTTATATGGTTCTCCATTCTTTCAACAATTGCAATGGTTGGAATTATTAAATTCCTTGTGATCTTAGTGGTAGCTGCTTCCCTTGGAATTTTTGTTGGGTTTGCTTTTGCAATTTTGGCCATCGCCATCTCTGGAGCAGCTTTCCTTTGGTTTTATGGAAACTTTTGGACAACAATGCTGATCATCTTTCTTGGAGGGCTGGCATTTATATTGAGCCACGAACGAGTTGCACTCTTTATCACCACATTGTATTCGGTTTATTGTGTATTGGTATGCACTGGATGGTTTGGTTTGGTTTTGGGCCTGAATTTGTCATTTGTTTCAAGTGATGCTCTGATTTATTTCCTAAAGAACAACATAAATGAGCATAGGAGATCGAACAGATATCCTGAACAAACTGCTGGGATGCCAGATCAGCCTCGCTTCTTTCATGATGATCCTATGCAAGCATCATCTTCTGAATTTAGTGGTGCAGGCTTTGCTGCTGATCGGAGTTCAGGCACACCCTCAACCAGTGGAGCTGATTCTGAGCTATCTTCTGAAGATGAAGTCATTCGTTTGTTAAATTGTACAGACCACTACGCAGTTTTGGGATTGTCTCGGTATGAGAATATGGATCCGTCCCTACTCAAGAAGGAGTACAGGAGAAAGGCAATGTTGGTCCACCCTGATAAAAACATGGGGAATGAAAAGGCTGCTGAAGCATTTAAAAAACTTCAAAATGCATACGAGGTGTTACTTGATTCGACAAAGCGAAAAACATACGATGATGAACTTAGAAGGGAAGAGCTGCTAAACATTTTCCGCAGGTTTCAGAGTGCTTCACGAAAGAGTGGAGGGAGTGGTCCATTTGCATTTTCACGTTCAGCAACGGATAGAGAAGATCCTTTCGGTGAATCAAGACGAATAGCTTGCAAAAAGTGCAACAAATTTCATTTATGGAGATACACTAACAAATCGAAATCTCAAGCTAGATGGTGCCAGGAATGCAAAGATTTTCATCAAGCAAAGGATGGAGATGGGTGGGTGGAGCAATCTTCCCAGCCTTTTCTTTTTGGATTGCTGCAGAAGGTAGATGCTCCTTCTGCCTACGTATGTGCAGATAGCCGAATATACGATGCTACTGGATGGTATATTTGTCAGGGAATGAGATGTCCAGCCAACACCCACAGGCCGAGTTTTCACGTAAACACGAGCGTAACCTCAAAGCAAAACACCAGAGGATCAAGTTCCAGCCAAAGAGGAGGCCAAATGCCTGCATCAAACATAGAAGAGAACATGACAGAAGAAGAATTCTTCGAGTGGTTTCAGAATGCCGTGCAGACAGGTGCGTTCGACAACGTCGGTGGCAGCAGCGCCACGGAGAGCTCACCTGCTAAAGCGGGAGGAAGTTTTAACAAAAGTAGTAGCAATAATAGTGGGAGTGGGAACAAGAAAAAGAAGAAGGGAAAGAAGTAG 2190 42.69 MARKGNQQKTGSERHASNNKKRGSDLQSKGQGRAREIKVFPGEVLPNDNHHSRAFEEGMVNQNSGEGIKNLKKFEKSLRKEKQGVEGFHSPEEPTCLPEESGNCNGNNEDSSIGEQYNGSDKVQDPLDGSFSCFLNGEHIRNVMGNLKFSDNVFVKSFLESMSSVLEAAHVLLEQQRPLLNSMKNNLLNASAYVGKKIMKAYPIVLKWMMHFGNVMLLLSIVWLDCALRGIDSFVRMGTTSFFSVIWFSILSTIAMVGIIKFLVILVVAASLGIFVGFAFAILAIAISGAAFLWFYGNFWTTMLIIFLGGLAFILSHERVALFITTLYSVYCVLVCTGWFGLVLGLNLSFVSSDALIYFLKNNINEHRRSNRYPEQTAGMPDQPRFFHDDPMQASSSEFSGAGFAADRSSGTPSTSGADSELSSEDEVIRLLNCTDHYAVLGLSRYENMDPSLLKKEYRRKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSTKRKTYDDELRREELLNIFRRFQSASRKSGGSGPFAFSRSATDREDPFGESRRIACKKCNKFHLWRYTNKSKSQARWCQECKDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPSAYVCADSRIYDATGWYICQGMRCPANTHRPSFHVNTSVTSKQNTRGSSSSQRGGQMPASNIEENMTEEEFFEWFQNAVQTGAFDNVGGSSATESSPAKAGGSFNKSSSNNSGSGNKKKKKGKK 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2142683 2149049 - CmaCh17G003850.1 Cma17g00385 312280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00385 729 PRINTS DnaJ domain signature 458 473 IPR001623 -
Cma17g00385 729 PRINTS DnaJ domain signature 475 495 IPR001623 -
Cma17g00385 729 MobiDBLite consensus disorder prediction 690 720 - -
Cma17g00385 729 MobiDBLite consensus disorder prediction 84 115 - -
Cma17g00385 729 MobiDBLite consensus disorder prediction 640 664 - -
Cma17g00385 729 PANTHER OS03G0832900 PROTEIN 1 729 - -
Cma17g00385 729 MobiDBLite consensus disorder prediction 398 422 - -
Cma17g00385 729 ProSiteProfiles dnaJ domain profile. 436 503 IPR001623 -
Cma17g00385 729 MobiDBLite consensus disorder prediction 8 32 - -
Cma17g00385 729 PANTHER OS03G0832900 PROTEIN 1 729 - -
Cma17g00385 729 ProSitePatterns Nt-dnaJ domain signature. 480 499 IPR018253 -
Cma17g00385 729 Pfam Cleavage inducing molecular chaperone 543 641 IPR032843 -
Cma17g00385 729 MobiDBLite consensus disorder prediction 100 115 - -
Cma17g00385 729 Gene3D DnaJ domain 425 517 IPR036869 -
Cma17g00385 729 MobiDBLite consensus disorder prediction 1 63 - -
Cma17g00385 729 SMART dnaj_3 435 495 IPR001623 -
Cma17g00385 729 MobiDBLite consensus disorder prediction 690 729 - -
Cma17g00385 729 CDD DnaJ 436 492 IPR001623 -
Cma17g00385 729 Pfam DnaJ domain 436 500 IPR001623 -
Cma17g00385 729 SUPERFAMILY Chaperone J-domain 377 499 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00385 K09534 DNAJC14; DnaJ homolog subfamily C member 14 - qsu:112036044 908.672
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01294 Cma17g00385 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00630 Cma-Chr4:3234786 Cma17g00385 Cma-Chr17:2142683 1.43E-110 dispersed
Cma16g00467 Cma-Chr16:2360646 Cma17g00385 Cma-Chr17:2142683 1.03E-108 dispersed
Cma17g00385 Cma-Chr17:2142683 Cma01g01645 Cma-Chr1:11266079 1.53E-11 dispersed
Cma19g00753 Cma-Chr19:7486757 Cma17g00385 Cma-Chr17:2142683 1.25E-08 transposed
Cma17g00385 Cma-Chr17:2142683 Cma08g01294 Cma-Chr8:7852510 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g34 Blo01g00041 . . Bda08g00322 . . . Bma05g01008 Cmo08g01259 Cmo17g00374 . . . . . . . . . . . . . . Cla06g00411 Cam06g0434 Cec06g0440 Cco06g0439 Clacu06g0420 Cmu06g0420 Cre06g1199 . . . . . Csa06g01853 Chy11g01588 . . . . . Bpe05g00806 . . . Sed04g3077 . . Cma08g01294 Cma17g00385 Car08g01159 Car17g00355 Cpe12g00336 Cpe17g00081 Bhi12g01953 Tan06g2785 Cmetu11g0566 . . . Lcy12g0870 . . . . . . . . . . Cme11g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008621 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 0 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00385 Cma_Chr17 FPKM 11.819348 13.069583 15.048285 16.417885 19.964775 21.178652 22.193867 19.817165 18.897984 18.551481