Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00387 ATGAGCCATCGAGCCACGCTAACTCTTCCTCTGCTCCGATTTTCCTTTTCTAGGGTTCTACGTCTACCTCAATTTCTCAAATTCCATCTTCATCGCAATCTTTTCTCACTGAATTCGCGTTGCCACTGCTGCTCTGCTAGGTCTGAATTAGTTGGATTCCTGACTCGGCAGATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGCCGCAGTTCCAAGGAAAGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGAAATCGCCGATTGTCGTTGAGGCAGCAAAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAGGTCTCTGAAGCTGCATGTTGTAGGATGCGAGAGCAATTTCATGATACTTATGGAGAGCATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTATAATGCAAAACACACTGGTGATTTTTCGGTTCTTGTAGAGGCTTGTCGGTTACTTCAGCAATTTGTTCGAGACAATGGGGATGTATTGAGCATCTTTGCTGGCAACGATTATTTATCCAACAAGGCCTTAGTGGACTACAGAGTTAAGAAATTTGCATACGCTTGCATCCAGACAGTATATCATAATAGAAACCAATTGAGGAATCAACTTTTTGCTGCACCTGAGAACTCGAGCACACCTGCAACTCTATTGTTAGATGCAATTGTTTTCTTATTACAACCCGAACTCCCATGGGTTTGTAAGATTGTTGGCTACTTTCTGGAAAGAAATGCATATGTGCTGATTAGGGATATCACTTTGGCGGGGAAGGAAACTGAAGATTCGCATCCCAGCAGTTCAGTGCCTTCTTTAGAACGTCTGCTTTCTCTTTTGAGTTCTCATGTTGGTGAGAAGCCATGCTGTTGCCCACGTGTTGATCCCAATTGGAGCTTCTCCTCCCAAATTCTTACTCTTCCTTTACTGTGGCAGACATTCCCTTACTTAAAGGAGGTTTTCGCTAGACGGGGGTTGATTGGACATTACATTCATCAGATGGCATCATGTGTTCAACATTACGCAAATGTACTCCCAAAGGATGTAACAGCTGACATTCCTGGCTATGCATGCCTTCTTGGAAATGTATTGGAAATTTCCAGAACTGCTCTATCTCAGCCTGACTGCTCATCCGAATTGGCAGTAGATCTTGCTTCCATCACAACATTCTTGTTGGAACTACTTCCTTCGATGAAATCACCTCTTAGAGATATGGAAGAGAGTGCTGCATTGGGTGACGACGATGTGGTCGTGTCTGATCAAGAAATAGAGCTACCATTGAATAAAAATGTTGAGAAGCAGATATGTGATGCTATTGATCCACGATTTCTCCTGCAGTTGGCAAATGCTTTATTTGGGCAGATTTCCCAAGTTAGTGGGCCTTATGATGGTCCTGATGATAAAGAGGTCAAAGCTGTTGGTACAGCCTGTGCTTTTCTGCATGTCACTTTCAATACACTACCTCTGGAGCAAATTATGACCGTTCTAGCATACAGAACAGAGTTAGTTCCAGTACTTTGGAATTTTATAAAGAAGTGCCATGAGAACCAAAAATGGTCGTCCTTTTCGGAGAAGTTGGCATATTTATCAGGAGATGCACCTGGTTGGCTATTACCTTTGGCTGTTTTCTGTCCTGTGTACAAGCACATGTTGACAATTATTGACAATGAGGAGTTTTATGAGCAGGAGAAGCCACTATCATTAAAGGATATCAGATGTCTAATTATTATTTTGAGACAGGCCCTATGGCAGCTTTTATGGGTGAGTCCTACAGCTCCTAGTAATTCTGCAAAACCTGCCGCTACTGCCCATGTTACTAAGAAGCACACCGTTGAATTCATTCAATACAGGGTTACAATTGTTGCTTCAGAGCTCCTGTCACAGTTGCAAGACTGGAACAATAGACGGCAATTTACACCCCCCAGTGACTTCCATGCTGATGCCGTGAATGATTATTTCATTTCTCAGGCCGTGATAGAAAATACCAGAGCACATGATATACTTAAGCAAGCTCCCTTTTTAGTACCGTTTACAAGCAGGGTTAAGATTTTCACTTCACAACTAACAGCAGCTAGGCAAAGGAATGGATCTCATGCGGTTTTTGCTAGAAACCGGTTTAGAATTCGACGAGATCATATATTGGAGGATGCTTTTAGTCAGATGAGTGCATTAACTGAAGATGATCTTCGAGGATCGATACGTGTGTCATTTGTTAATGAATTTGGAGTTGAGGAGGCTGGAATTGATGGTGGTGGTATTTTCAAAGATTTCATGGAGAACATTACACGGGCAGCCTTTGATGTGCAGTATGGTTTATTTAAGGAAACAGCTGATCACTTGCTCTACCCCAATCCTGGTTCAGGAATGATACATGAGCAACATCTCCAATTTTTTCATTTCCTTGGAGTTCTTTTGGCTAAGGCAATGTTTGAAGGAATTCTTGTTGATATTCCTTTTGCAACATTCTTCTTGAGCAAGCTAAAACAGAAGTACAACTATCTGAATGACTTGCCATCCTTAGACCCTGAATTGTATCGCCACCTTATTTTCTTAAAGCATTTTGAAGGGGACATTTCTGAACTGGAGCTATATTTTGTTATTATAAACAATGAATATGGAGAGCAAACAGAAGAAGAGCTACTCCCTGGAGGAAAAAACCGTCGTGTCACAAGTGAAAATGTCATCACATTCATTCATCTTGTTGCCAATCATCGTTTGAACTTTCAGATACGGCAGCAAAGTTCTCATTTCTTGAGAGGGTTTCAGCAACTTATACAGAAAGAATGGATTGATATGTTTAATGAACATGAATTCCAGCTTTTGATATCAGGTTCACTGGACGGCTTGGATGTGGATGACCTACGGACACATACTACTTATTCAAGTGGCTATCATAAAGAACATTATGTCATTGAGATGTTTTGGGAAGTTATCAAAAGTTTCTCAGTGGTAAACCAAAAGAAATTTCTGAAGTTTGTGACTGGTTGCTCTCGAGGTCCACTTCTTGGCTTTAGATATCTTGAGCCATGTTTTTGCATACAAAGGGCTGCTGGTAATGCAAATGAAGAAGCTCTTGATCGCTTACCTACATCAGCGACTTGTATGAACCTTTTGAAGCTTCCACCCTATAGAAGCAAGGAGCAACTGGCAAACAAATTGATGTATGCCATAAATGCAGATGCCGGTTTTGATCTAAGCTAA 3273 41.52 MSHRATLTLPLLRFSFSRVLRLPQFLKFHLHRNLFSLNSRCHCCSARSELVGFLTRQMFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRKVSEAACCRMREQFHDTYGEHCEKVDRHCFGPDSEFFHQLLFFYNAKHTGDFSVLVEACRLLQQFVRDNGDVLSIFAGNDYLSNKALVDYRVKKFAYACIQTVYHNRNQLRNQLFAAPENSSTPATLLLDAIVFLLQPELPWVCKIVGYFLERNAYVLIRDITLAGKETEDSHPSSSVPSLERLLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPYLKEVFARRGLIGHYIHQMASCVQHYANVLPKDVTADIPGYACLLGNVLEISRTALSQPDCSSELAVDLASITTFLLELLPSMKSPLRDMEESAALGDDDVVVSDQEIELPLNKNVEKQICDAIDPRFLLQLANALFGQISQVSGPYDGPDDKEVKAVGTACAFLHVTFNTLPLEQIMTVLAYRTELVPVLWNFIKKCHENQKWSSFSEKLAYLSGDAPGWLLPLAVFCPVYKHMLTIIDNEEFYEQEKPLSLKDIRCLIIILRQALWQLLWVSPTAPSNSAKPAATAHVTKKHTVEFIQYRVTIVASELLSQLQDWNNRRQFTPPSDFHADAVNDYFISQAVIENTRAHDILKQAPFLVPFTSRVKIFTSQLTAARQRNGSHAVFARNRFRIRRDHILEDAFSQMSALTEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGVLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHFEGDISELELYFVIINNEYGEQTEEELLPGGKNRRVTSENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDGLDVDDLRTHTTYSSGYHKEHYVIEMFWEVIKSFSVVNQKKFLKFVTGCSRGPLLGFRYLEPCFCIQRAAGNANEEALDRLPTSATCMNLLKLPPYRSKEQLANKLMYAINADAGFDLS 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2167340 2183333 + CmaCh17G003870.1 Cma17g00387 312282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00387 1090 SUPERFAMILY Hect, E3 ligase catalytic domain 724 1082 IPR035983 GO:0004842
Cma17g00387 1090 Pfam HECT-domain (ubiquitin-transferase) 785 1090 IPR000569 GO:0004842
Cma17g00387 1090 CDD HECTc 728 1088 IPR000569 GO:0004842
Cma17g00387 1090 Gene3D Hect, E3 ligase catalytic domains 730 968 - -
Cma17g00387 1090 ProSiteProfiles HECT domain profile. 749 1090 IPR000569 GO:0004842
Cma17g00387 1090 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 58 1090 IPR044611 GO:0000209|GO:0061630
Cma17g00387 1090 PANTHER BNAC01G43970D PROTEIN 58 1090 - -
Cma17g00387 1090 Gene3D Hect, E3 ligase catalytic domain 972 1089 - -
Cma17g00387 1090 Gene3D Hect, E3 ligase catalytic domain 854 933 - -
Cma17g00387 1090 SMART hect_3 747 1090 IPR000569 GO:0004842
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00387 K10589 UBE3C; ubiquitin-protein ligase E3 C [EC:2.3.2.26] - csv:101218340 1954.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00958 Cma-Chr16:7413615 Cma17g00387 Cma-Chr17:2167340 1.88E-67 dispersed
Cma17g00387 Cma-Chr17:2167340 Cma20g00754 Cma-Chr20:3535112 4.12E-31 dispersed
Cma17g00387 Cma-Chr17:2167340 Cma06g00429 Cma-Chr6:1974667 4.89E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g27 Blo01g00043 . . Bda08g00320 . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . Csa06g01841 Chy11g01595 . . . . . Bpe05g00808 . . . Sed09g0619 . . . Cma17g00387 . Car17g00357 Cpe12g00338 . Bhi12g01956 Tan06g2787 Cmetu11g1561 . Hepe03g0028 . Lcy12g0884 . . . . . . . Lsi09g01511 . . Cme11g02100
Vvi5g213 Blo01g00043 . . . . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 Cone14ag0699 . . . . . . . . . . . Bpe05g00808 . . . . . . . Cma17g00387 . Car17g00357 . . . . . . . . . . . . . . . . . . . Cme11g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010669 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00387 Cma_Chr17 FPKM 16.410444 18.107773 18.078911 18.846397 12.343147 12.181373 14.29798 27.692011 26.864609 30.507025