Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00388 ATGGTGAAGGTACGCATGAACACCGCCGATGTCGCCGCCGAGGTGAAATGCCTCCGAAAATTGATAGGCATGCGATGCTCCAATGTCTATGATCTCTCACCCAAGACATACATGTTCAAGCTTATGAACAGTAGTGGAGTCACTGAATCGGGTGAGAGTGAGAAGGTGTTGCTGTTGATGGAAAGTGGAGTCAGACTACATACGACGGAATATGTTCGAGACAAAAGCAATACTCCTTCTGGTTTCACTCTCAAACTAAGAAGGCATATACGCACAAGAAGACTTGAGGATGTACGGCAACTTGGATATGATCGGATCATCCTATTTCAGTTTGGGTTAGGTGCTAGTGCACATTATGTTATCTTGGAGCTGTATGCCCAGGGTAATATCCTTCTTACGGATTCTGAATTTATGGTCTTAACTCTTCTTCGATCTCACAGGGACGATAATAAGGGGGTAGCAATCATGTCACGACATCGATATCCAACTGAAATTTCTCGAGTGTTTGAGCGAACGACGGCTGAAAAATTGCAGGAAGCACTCACTCTGAGTGACAATGTAGTTAACCTAACTGGTAACGAAAATAATGAAACAGATCCTTCAAAGCAACAGCCGGGTAACCACAAGGTCCCGAAGCCTTCTGTCTCAAGTAAAGCCCAAGGTGATGGCAGTCGAGCCAAACAGACTACTTTGAAAGCTGTTCTTGGGGAGGCACTAGGATATGGAACTGCGCTGTCTGAGCACATTATATTAAATGCTGGTCTGATTCCAAATATGAAACTTTGTAATGATAATAAACTTGATGATGGTAGTCTTCAGCTCTTAGTGCAAGCTGTTGCAAATTTTGAGGATTGGCTAGAGGATGTAATATTTGGTACTAGAGTTCCTGAAGGGTACATTTTGATGCAAAAGAAAAATGTTAAAAAAGAAGAATCTGAGGCTTCAACTGATAGCGAGATCTATGACGAGTTCTGCCCAATTTTATTAAACCAATTCATGTCTAGAAAGTACACAAAGTTTGAGACATTTGATGCAGCTTTGGATGAATTCTACAGTAAAATTGAGAGTCAAAAGTCAGAACAGCAACAAAAGGCCAAGGAGAGCTCTGCAACTCAAAAACTCAATAAAATACGCATGGATCAGGGAAATCGTGTAGAGATATTAAAACAAGAAGTTGATCATTGTGTTAAAATGGCAGAATTAATAGAATATAATTTAGAAGATGTGGATGCTGTTATATTAGCCGTTCGTGTTGCTCTTGCCAAAGGCATGAGCTGGGAGGATCTTGCACGAATGGTGAAGGAAGAAAAGAAATCTGGAAATCCAGTGGCCGGTCTTATTGACAAACTTAATCTTGAAAGGAATTGCATGACTTTGCTGCTGAGCAACAATCTTGATGAAATGGATGATGATGAAAAGACACAACCAGCTGATAAGGTAGAGGTGGATATTTCACTTTCAGCTCATGCCAATGCTCGGCGATGGTATGAACTTAAGAAAAAACAAGAGAGCAAACAGGAGAAAACTATTACTGCACATGAAAAAGCTTTTAAAGCTGCTGAAAGAAAAACTCGTCTTCAACTTTCCCAGGAAAAAAAAGTTGCCACGATATCTCATATGCGCAAAGTTCATTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGTGGACGTGATGCTCAGCAAAACGAGATGATAGTTAAACGTTACATGTCAAAGGGAGATTTGTATGTCCATGCTGATTTGCACGGAGCTTCTAGCACTGTGATTAGGAATCACAAGCCTGAACAACCAGTGCCTCCACTCACGTTGAACCAAGCAGGATGTTTTACGGTTTGTCATAGCCAGGCATGGGATTCAAAGATAGTCACTAGTGCCTGGTGGGTTTATCCTCACCAGGTTAGCAAAACTGCTCCTACAGGGGAATATCTTACAGTTGGGAGTTTTATGATTCGTGGAAAGAAGAATTTTCTTCCTCCACATGCTCTTGTCATGGGTTTTGGATTGTTATTTCGCTTGGATGAGAGCTCTTTAGGTTCACATTTAAATGAAAGGAGGGTAAGAGGTGAGGAGGATGGAGTGAATGATGTTGAAGAAAATGAACCTCTTAATGAAGAATCTGATACTGAATATGAGAAGAGGGAATCAGAAGAAGTATCCAACCCATCTGCCAATTCAGATAGACTAGTTATAACGAACTTACCTGGACCCGAGGGCACTGAATCACTTGACATTCCCGTTGAAGGTAAAATGGATTTGAATGGTATCAATAAGGATAACCAACCTGATGTTACAGATAATGTTTCCCTTGTCACACCACAACTTGAAGATCTCATGGATAAAGCTCTTGAGCTTGGATCTGGCACTGCATCTAGCAAAAATTATATATTAGAGACTTCTAAGGTTGATTTGGTCGATGAACCCCATCCAGATGATAATAATGCTGCAGTGAGAGAGAAACCCTACATCTCAAAAGCTGAAAGAAGAAAACTTAAGAAAGGTCAGAATAGCAGTTCTACAGACAGCAACATCAAGCAGGAAACTCAGCAATCAAGAGATATTGATGTTTCTTTGAATCATCCTCCAAACAAGGTTAATAATCCGAAGTCAGGTTCTGTAAAAGTCAGCCGTGGTCAGAAGGGTAAACTGAAGAAAATGAAAGAAAAATATGCTGATCAAGATGAAGAAGAAAGAAGTATCCGCATGGCTTTATTGGCATCCTCAGGTAAGCTACCGAAAAATGAAGGGCCACAAAATGTGAAGGAAACAGCTTCTGATGTGAAGAAACGTGATGAAGGCGCTCTAGAGGCTCCAAAAATATGCTACAAATGTAAGAAGCCAGGTCACTTGTCTCGAGATTGTCCCAAACATCCTGATAATCTTTCACATAGTCACTCGAATGGTGCAACGCAAGACGATCGCCAAGTGGCATTGGACGATGATGCCGAACTGGACAAAATAACTATGGAAGAGGATGATATTCATGAAATAGGTGAAGATGAGCGAGAAAAACTGAATGACGTGGATTACTTGACCGGACATCCTTTGCCTACCGACATTATCTTGTATGCTGTGCCGGTGTGTGGGCCGTACAATGCAGTGCAATCTTACAAATACCATGTTAAGATTGTTCCAGGCCCTCTAAAAAAAGGGAAAGCTGCAAAAACTGCCATGAACCTGTTCGCGCACATGCCCGAAGCAACAAATAGAGAGAAAGAACTGATTAAAGCATGCACAGATCCAGAGCTGGTGAGCGCGATCATCGGGAATGCTCGGGTTACAGCGGCGGGTCTCACTCAGTTAAAGCAGAAGCAAAAAAAGGGAAAGAAAAGCAGCAAACAAGGAGCTGCTGCTAGCTAG 3378 41.47 MVKVRMNTADVAAEVKCLRKLIGMRCSNVYDLSPKTYMFKLMNSSGVTESGESEKVLLLMESGVRLHTTEYVRDKSNTPSGFTLKLRRHIRTRRLEDVRQLGYDRIILFQFGLGASAHYVILELYAQGNILLTDSEFMVLTLLRSHRDDNKGVAIMSRHRYPTEISRVFERTTAEKLQEALTLSDNVVNLTGNENNETDPSKQQPGNHKVPKPSVSSKAQGDGSRAKQTTLKAVLGEALGYGTALSEHIILNAGLIPNMKLCNDNKLDDGSLQLLVQAVANFEDWLEDVIFGTRVPEGYILMQKKNVKKEESEASTDSEIYDEFCPILLNQFMSRKYTKFETFDAALDEFYSKIESQKSEQQQKAKESSATQKLNKIRMDQGNRVEILKQEVDHCVKMAELIEYNLEDVDAVILAVRVALAKGMSWEDLARMVKEEKKSGNPVAGLIDKLNLERNCMTLLLSNNLDEMDDDEKTQPADKVEVDISLSAHANARRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKKVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIRNHKPEQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHALVMGFGLLFRLDESSLGSHLNERRVRGEEDGVNDVEENEPLNEESDTEYEKRESEEVSNPSANSDRLVITNLPGPEGTESLDIPVEGKMDLNGINKDNQPDVTDNVSLVTPQLEDLMDKALELGSGTASSKNYILETSKVDLVDEPHPDDNNAAVREKPYISKAERRKLKKGQNSSSTDSNIKQETQQSRDIDVSLNHPPNKVNNPKSGSVKVSRGQKGKLKKMKEKYADQDEEERSIRMALLASSGKLPKNEGPQNVKETASDVKKRDEGALEAPKICYKCKKPGHLSRDCPKHPDNLSHSHSNGATQDDRQVALDDDAELDKITMEEDDIHEIGEDEREKLNDVDYLTGHPLPTDIILYAVPVCGPYNAVQSYKYHVKIVPGPLKKGKAAKTAMNLFAHMPEATNREKELIKACTDPELVSAIIGNARVTAAGLTQLKQKQKKGKKSSKQGAAAS 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2184685 2195012 + CmaCh17G003880.1 Cma17g00388 312283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00388 1125 SUPERFAMILY Retrovirus zinc finger-like domains 940 968 IPR036875 GO:0003676|GO:0008270
Cma17g00388 1125 PANTHER - 3 1110 - -
Cma17g00388 1125 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Cma17g00388 1125 MobiDBLite consensus disorder prediction 915 937 - -
Cma17g00388 1125 Pfam NFACT protein C-terminal domain 1008 1099 IPR021846 -
Cma17g00388 1125 Pfam NFACT protein RNA binding domain 548 659 IPR008532 -
Cma17g00388 1125 MobiDBLite consensus disorder prediction 713 727 - -
Cma17g00388 1125 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1110 - -
Cma17g00388 1125 MobiDBLite consensus disorder prediction 188 227 - -
Cma17g00388 1125 MobiDBLite consensus disorder prediction 842 880 - -
Cma17g00388 1125 MobiDBLite consensus disorder prediction 810 841 - -
Cma17g00388 1125 SMART c2hcfinal6 946 962 IPR001878 GO:0003676|GO:0008270
Cma17g00388 1125 MobiDBLite consensus disorder prediction 690 746 - -
Cma17g00388 1125 Pfam NFACT N-terminal and middle domains 10 161 - -
Cma17g00388 1125 Pfam NFACT N-terminal and middle domains 226 540 - -
Cma17g00388 1125 MobiDBLite consensus disorder prediction 810 903 - -
Cma17g00388 1125 Gene3D - 942 983 - -
Cma17g00388 1125 ProSiteProfiles Zinc finger CCHC-type profile. 947 962 IPR001878 GO:0003676|GO:0008270
Cma17g00388 1125 Pfam Zinc knuckle 946 962 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00388 K24971 NEMF, RQC2; nuclear export mediator factor NEMF - csv:101208866 1941.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g26 Blo01g00045 . . Bda08g00319 . . . Bma05g01011 . Cmo17g00377 . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . Chy11g01596 . . . . . Bpe05g00809 . . . . . . . Cma17g00388 . Car17g00358 Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01512 . . Cme11g02101
Vvi5g211 . . . . . . . . . Cmo17g00377 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01596 . . . . . . . . . . . . . Cma17g00388 . Car17g00358 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009988 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 3 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00388 Cma_Chr17 FPKM 14.289495 16.195095 22.36474 21.824339 15.415405 16.595453 17.396227 30.23555 30.062046 27.963541