Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00394 ATGGAAGTTGCTAAAGTCGCTCAAATTCTATCCGAGACGCTTAGCAATGACCCGCAAGTCATCCATGGAGCCACCGAGTCTCTCGATCGCCTATCTTCTCATCCTGAGCTTCCGTCTGCTCTACTTTGTATTGCTACTGGAAGTCACGATCAAGGTCAAAAGATAGCTGCTGCTGCTTACCTTAAAAATTTGAGTAGGAGAAATACTGAGGGCGAATTTTCATGTTCAAAAGTCAGCAAGGGGTTCAAGGATGAACTGCTGAGAGCGTTGTTCCAAGCGGAACCAAAAGTTCTAAAAGTTTTGGTTGAAGTGTTTCACAGCATAGTGGTCAATGAGTTTGTGAAGCAGAGCTCATGGCCTGAACTTGTGTCTGATCTTTGCTCTGCTATTCAAAACAGCAATCTTTTCAACAATGGAGCCAAATGTCAATGGAATGCTATCAACGCCCTGTCTGTTCTCTGTACAACGTGCAGACCTTTCCAATACTTTTTGAATCCTAAAGATTCTAAGGAGCCCGTACCACCACAGTTAGAGCTACTTGCAAACACGATTATTGTACCCCTGCTAGCTGTATTCCATCGTCTTGTTGAACAGGCTCTTTCTAACCATGATGGAAGGGAAGTTGAGATAGATAAGATTCTTTCAATAGTATGCAAATGTGTCTACTTTTCTGTGAGATCGCATATGCCTTCTTCTTTGGTGCCTCTACTTCCATCGTTTTGCCATGATTTAATTAGCATTCTAGATTCCATAAAATTTGAGGCTGCAGTTTCCCCAGAGTATGGCAATGTGAGCAGGTTGAAAACTGCGAAGAGAAGCCTGCTTATTTTCTGCGTCTTTGTTACCCGACACCGAAAGCATACTGATAAGTTGATGCCACACATCATAAAATGTGTCTTGAACATTGTGAATTATAGCAAAAATGCTCATAAGCTCGACTTTTTATCAGAGAGGATTATTTCGCTAGGCTTTGATGTGATTTCACATGTTCTGGAGACGGGGCGAGGATGGAGGCTGGTTTCTCCGCACTTTTCAACATTGATACACTCTGGAATATTTCCATCCCTTATAATGAACGAGAAGGACGTTTCTGAGTGGGAAGATGATCCAGATGAGTACTTAAGGAAGAATCTTCCATCTGACCTAGAAGAAGTTTCTGGTTGGAGGGAGGATTTATACACAGCCAGGAAAAGTGCAATAAACTTGCTCGGCGTTATTGCATTGTCGAAGGGGCCTCCCAGAGTGACCCATATGAATGGTTCTTCAGCTTCATCAAAGCGTAAAAAAGGCAGCAAGAGAACAAATAATCAATGCGCTACTATGGGGGAGTTGGTTGTACTTCCATTTCTTTCGAAATATCCTATTCCCTCTGATGCAAACGCTTCCGAAACCAGTATTGTAAATAGTTACTATGGTGTTCTAATTGCGTATGGTGGCTTGCTTGATTTTCTAAGGGAGCAACAACCTGGATACGTGACGTTTCTAATCCGCACAAGAGTGTTGCCTCTATATGCTGTGTCAACGTGCCTGCCATATTTAGTTGCCTCTGCAAATTGGGTACTTGGAGAGCTTGCATCCTGCCTGCCTGAAGAGGTCTGTGCCGAAATATATTCTTCATTGGTTAAGGCATTATCCATGCCTGATAAGGAGGAAGTTTCGTTTTACCCTGTCCGAGTCTCTGCTGCTGGAGCAATAGCCAAGCTTCTTGAAAATGACTACTTGCCACCTGAGTGGTTACCTCTTCTTCAAGTTGTAATAGGTGCGATTGGCCAAGATGATGAAGAGAACTCCATTTTGTTTCAGCTTCTCAGTTCCATTGTGGAAGCTGGTAATGAAAACGTCGCCATCCATATTCCTCACGCTGTTTTGTCTCTGGTTGGTGCAATCTCAAAAAGCATACCTCCAAACTTGGAGCCATGGCCTCAAGTTGTTGAACGTGGGTTTGCAGCTTTATCAGTGATGGCTCAGTCTTGGGAAAACTTCATACTTGAGAAAACTGAGCAAGATGCATCATGTGAACGGTCAACATCGGAGCAAGCCACAATCAGTAGATCATTCTCGTCTCTCTTGCAGCAGGCGTGGCTTGCACCCATGTACCCATTGTTGTCCCAGGAAATGGACGAAGATCAGGAATTCTTGACCCCTCCATCATGCATAGATCATTCATCAAGGTTGCTTCAGTTCATCATGCTGTCTGTTACAGGGAGCAATACTATTTCAGATCTTAAAGTATCTGAATTAGTATCAGTCTGGGCTGATCTTATTGCAGACTGGCATTCTTGGGAAGAATCAGAGGATTTCTCAGTCTTTAATTGTATTATGGAAGTTGTTAGATTAAATAACAAATATGCACTGAAGAACTTTTTTGTGAAGCCAACACCATCTCCTCCAGCTCCACCAGTGCCTCAAGGGTCTATTGTAGAAAACATTGGAGCTTTCATTAATCAGACAATCTCACAATATCCATCTGCTACATGGAAAGCTTGTTCGTGTATTCATATGTTATTGAATGTTCTTAGTTACTCGTTTGAAGCGGAAGGCGTTAAGGAGTCGCTGGTAGTCACGTTTAGTCGGACGTCGTTTTCCCGTTTTAGAGAAATCCAAAGCAAACCAAGTGCATTGTGGAAGCCTTTACTGCTTTCCATATCAACATGCTATATCTGTCTTCCTGATACTGTAGAAAGACTTTTGGAGAAGTATGATGGAGGAGGCTTCACAGTCTGGGTCTCAGCCCTTGGTTATATCTGTAGCAGCTCTTTTGCGCCCGGCTTGTCTGCGGAATCGGAGATAAAGTTGATTGTGTTGACATTGGTCAAGGTGGTGGAACGAATAATGGAGTTAGGAAAGCCAAGAGATGATTTTCTATGGAAGTCCTTCAGTTCATTGATGGAGGCTTCCATACGGCTGAAAGAAGTGCGAGAAGAAAAGGAAGAAGAATCTGATGAAAATGAAGAGGAGGAGGACGACGACACTGATGAAATAGAAGATGATGAGGATTCTGATGCCGATGAACTTGAAGAAACTGAAGAACAATTTCTGGAAAGGTATGCCAAAGCGGCTATTGATTTGGAAAACAATACTCTTATTGAAGAAGGGGATGTGGAAGATTACGACCATGATATTGAATTGGGTTGTTATGAAGAAGTAGATGAGGGAAGGATCGTCTACTCTTTACTGGAGAAATATCACCCCATCCTGAGTCAGGGACAGGGATGGCCACCAGAGCTCCCAAGGAGATTCTTGAATGCACATCCAGAATATACTTCGTTTCTCCGACTATCTGGGATGGAAGAGAAGAGCCCAAGGTCAAAGGGTTTCTTCTTCATCCCTTCCCATCTTGCAGAAACCCCGGCCCTTTTCTTCTTAATTCTCAATCTCAATCTCTGTCTCCACCGCTGTAGAGCTTTTCCATGGCTCCAATTACCTTTTCTCTGA 3435 43.11 MEVAKVAQILSETLSNDPQVIHGATESLDRLSSHPELPSALLCIATGSHDQGQKIAAAAYLKNLSRRNTEGEFSCSKVSKGFKDELLRALFQAEPKVLKVLVEVFHSIVVNEFVKQSSWPELVSDLCSAIQNSNLFNNGAKCQWNAINALSVLCTTCRPFQYFLNPKDSKEPVPPQLELLANTIIVPLLAVFHRLVEQALSNHDGREVEIDKILSIVCKCVYFSVRSHMPSSLVPLLPSFCHDLISILDSIKFEAAVSPEYGNVSRLKTAKRSLLIFCVFVTRHRKHTDKLMPHIIKCVLNIVNYSKNAHKLDFLSERIISLGFDVISHVLETGRGWRLVSPHFSTLIHSGIFPSLIMNEKDVSEWEDDPDEYLRKNLPSDLEEVSGWREDLYTARKSAINLLGVIALSKGPPRVTHMNGSSASSKRKKGSKRTNNQCATMGELVVLPFLSKYPIPSDANASETSIVNSYYGVLIAYGGLLDFLREQQPGYVTFLIRTRVLPLYAVSTCLPYLVASANWVLGELASCLPEEVCAEIYSSLVKALSMPDKEEVSFYPVRVSAAGAIAKLLENDYLPPEWLPLLQVVIGAIGQDDEENSILFQLLSSIVEAGNENVAIHIPHAVLSLVGAISKSIPPNLEPWPQVVERGFAALSVMAQSWENFILEKTEQDASCERSTSEQATISRSFSSLLQQAWLAPMYPLLSQEMDEDQEFLTPPSCIDHSSRLLQFIMLSVTGSNTISDLKVSELVSVWADLIADWHSWEESEDFSVFNCIMEVVRLNNKYALKNFFVKPTPSPPAPPVPQGSIVENIGAFINQTISQYPSATWKACSCIHMLLNVLSYSFEAEGVKESLVVTFSRTSFSRFREIQSKPSALWKPLLLSISTCYICLPDTVERLLEKYDGGGFTVWVSALGYICSSSFAPGLSAESEIKLIVLTLVKVVERIMELGKPRDDFLWKSFSSLMEASIRLKEVREEKEEESDENEEEEDDDTDEIEDDEDSDADELEETEEQFLERYAKAAIDLENNTLIEEGDVEDYDHDIELGCYEEVDEGRIVYSLLEKYHPILSQGQGWPPELPRRFLNAHPEYTSFLRLSGMEEKSPRSKGFFFIPSHLAETPALFFLILNLNLCLHRCRAFPWLQLPFL 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2220854 2238323 - CmaCh17G003940.1 Cma17g00394 312289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00394 1144 MobiDBLite consensus disorder prediction 977 1009 - -
Cma17g00394 1144 Coils Coil 962 993 - -
Cma17g00394 1144 MobiDBLite consensus disorder prediction 970 1009 - -
Cma17g00394 1144 Pfam Cse1 182 403 IPR013713 GO:0006886
Cma17g00394 1144 MobiDBLite consensus disorder prediction 413 434 - -
Cma17g00394 1144 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 3 1092 - -
Cma17g00394 1144 SUPERFAMILY ARM repeat 3 1010 IPR016024 -
Cma17g00394 1144 PANTHER IMPORTIN-7, 8, 11 3 1092 - -
Cma17g00394 1144 Gene3D - 1 1031 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00394 - - - cpep:111807225 2003.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00394 Cma-Chr17:2220854 Cma08g00097 Cma-Chr8:511222 4.88E-15 transposed
Cma17g00394 Cma-Chr17:2220854 Cma17g00572 Cma-Chr17:4702000 5.45E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1 . . . . . . . . . Cmo17g00383 . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . Chy11g01605 . . . . . . . . . Sed09g0632 . . . Cma17g00394 . Car17g00365 Cpe12g00345 . Bhi12g01983 Tan06g2808 Cmetu11g2556 . . . Lcy12g0895 . . . . . . . Lsi09g01519 . . Cme11g02111
Vvi5g189 . . . . . . . . . Cmo17g00383 . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . Chy11g01605 . . . . . . . . . . . . . Cma17g00394 . Car17g00365 . . . . . . . . . . . . . . . . Lsi09g01519 . . Cme11g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010694 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 5 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00394 Cma_Chr17 FPKM 3.876923 4.503968 5.456614 5.614989 9.041749 8.028994 8.305994 5.922475 5.279532 5.679626