Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00399 ATGGTGGGCGGCGGTGGCGAGGAAAATGAAGATCGGGCGGCGCGTGTGCGATTGGGGAAGTACGAGCTGGGGAAAACACTGGGGCATGGGAACTTCGGAAAGGTCAAATTAGCTATCAATTTTGAAACGGATCAGCCTTTTGCTGTTAAGGTCCTCGACAAGACCAAGATCATCGACCTCAATATCTCCGATCAGTTTAAAAGGGAAATACGGACGCTGAAGCTTCTCAAGCATCCAAATATAGTGAGACTACACGAGGTGTTGGCCAGTAAAAGCAAAATTTACATGGTTCTCGAGTATGTGAACGGGGGAGAATTGTTTAATAGAATCGCATCCAACGGGAAGCTGTCGGAAGGTCGAGGTAGAAAAATCTTCCAACAGTTAATTGACGGTGTGAGTTACTGCCATTGGAAAGGCGTTTACCATAGGGATCTCAAGCTCGAGAACATGTTGGTTGATGGGAAGGGAAATATTAAGATATCTGATTTTGGCTTAAGTGCATTACCCGAGCATTTAAGGAATGATGGCTTACTTCACACCACGTGCGGAAGCCCAAACTACGTGGCGCCTGAGATTTTAGCTAACAGAGGGTATGATGGTGCGGCCTCGGATGTTTGGTCTTGTGGGGTTATCTTATACGTAATTCTTACTGGATCGCTTCCTTTCGAAGATAGAAATTTGTGCGTCCTTTACAATAAGCCATCTTATCTCGAGGAAAGGAGTCCGAGATCTCCCACGACTATAAATGCTTTTGAACTGATTGGAATGTCATCATGCTTAGACCTTTCAGGCTTATTTGAGAAAGAGGATGTTTCTGAGAGGAAGATTAGATTTACAACCATTCACTCAGCCAAAGAAGACATCCTCAATCGGATGGAGGATCTTGTCAAAGAGATGGGGTTTCTTGTCCACAAGAAAGAAGGAAGGTTGAAAGTAATGAGAGAGCACAAGGGGCAGAATGGTGTGGCCATCATACTTTCAGTATCAGCAAAGGTTTTTGAGATAAGCCCTTCACTATATGTTATAGAATTAAGAAAGGTGCAAGGAGAATCATCTTCGTATAGACAGCTATGTAAAATTTTATCAAGTGATTTAGGCATCCCGTCGAGACAAGGCTCAATTGTCGCAACTTACACTTCCGGCGAGATGACCAGCGGCTTGCAGATGAATCCTCAGTTAGAGCAGATCCATGGTGAAATTCGTGACAATTTTCGTGCGCTTTCAAATGGGTTTCAAAGACTGGATAATATCAGAGATTCCAGTAGACAAAGTAAGCAGTTGGAGGAGCTCACAGGAAAGATGAGAGAATGTAAAAGATTAATTAAAGATTTTGACCGTGAACTCAAGGATGAAGAGAGTAAAAATCCACCGGAAGTGAATAAGCAGCTCAACGATGAGAAGCAATCAATGATCAAAGAGCTGAATTCATTTGTTGCACTGAGGAAAACGTACGTGAATAGTCTTGGGAATAAAAGAGTTGAGCTATTTGATGAGGGAGGTGTAAGTGAACCTACTGCTGATAGTAATGTTCAGATGGCCTCATCAATGACAAATCAAGAACTTATGGATGCTGGGAAGAAAACAATGGATGAGACCGATCAGGCTATTGAACGCACTAAAAAGGTGGTCGAACAAACTATTGAAGTTGGAACTCAAACTGCTGTTACATTAAAAGGCCAAACTGATCAAATGGGCCGTATAGTAAATGAGCTCGACACGATTAATTTTTCGATTAAGAAGGCTTCCCAGCTTGTGAAAGAAATTGGCAGACAGGTTGCTACAGACAAATGCATCATGCTGTTTCTGTTCCTAATTGTTTGTGGAGTGATAGCCATAATCGTTGTTAAGATTGTGAACCCCAACAACAAAGACATCAGGGATATTCCTGGATTGGCACCGCCCGTTCCCGCCAGGAGGCTTTTGTATCTGAGGACACCTGAACATTTCGAGTAA 1953 42.91 MVGGGGEENEDRAARVRLGKYELGKTLGHGNFGKVKLAINFETDQPFAVKVLDKTKIIDLNISDQFKREIRTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGGELFNRIASNGKLSEGRGRKIFQQLIDGVSYCHWKGVYHRDLKLENMLVDGKGNIKISDFGLSALPEHLRNDGLLHTTCGSPNYVAPEILANRGYDGAASDVWSCGVILYVILTGSLPFEDRNLCVLYNKPSYLEERSPRSPTTINAFELIGMSSCLDLSGLFEKEDVSERKIRFTTIHSAKEDILNRMEDLVKEMGFLVHKKEGRLKVMREHKGQNGVAIILSVSAKVFEISPSLYVIELRKVQGESSSYRQLCKILSSDLGIPSRQGSIVATYTSGEMTSGLQMNPQLEQIHGEIRDNFRALSNGFQRLDNIRDSSRQSKQLEELTGKMRECKRLIKDFDRELKDEESKNPPEVNKQLNDEKQSMIKELNSFVALRKTYVNSLGNKRVELFDEGGVSEPTADSNVQMASSMTNQELMDAGKKTMDETDQAIERTKKVVEQTIEVGTQTAVTLKGQTDQMGRIVNELDTINFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPVPARRLLYLRTPEHFE 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2265968 2281368 - CmaCh17G003990.1 Cma17g00399 312294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00399 650 SUPERFAMILY Protein kinase-like (PK-like) 17 249 IPR011009 -
Cma17g00399 650 SMART tSNARE_6 521 588 IPR000727 -
Cma17g00399 650 CDD CIPK_C 249 365 - -
Cma17g00399 650 Pfam NAF domain 245 305 IPR004041 GO:0007165
Cma17g00399 650 Gene3D Transferase(Phosphotransferase) domain 1 107 247 - -
Cma17g00399 650 SMART serkin_6 21 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00399 650 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 15 233 - -
Cma17g00399 650 SUPERFAMILY SNARE fusion complex 516 589 - -
Cma17g00399 650 Pfam Protein kinase domain 21 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00399 650 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 260 372 - -
Cma17g00399 650 ProSiteProfiles Protein kinase domain profile. 21 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00399 650 Gene3D - 517 596 - -
Cma17g00399 650 Coils Coil 427 454 - -
Cma17g00399 650 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Cma17g00399 650 Gene3D Kinase associated domain 1, KA1 248 367 - -
Cma17g00399 650 PANTHER SERINE/THREONINE KINASE 15 233 - -
Cma17g00399 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Cma17g00399 650 CDD SNARE_SNAP25N_23N_29N_SEC9N 525 587 IPR044766 GO:0005484|GO:0031201
Cma17g00399 650 ProSiteProfiles NAF domain profile. 243 267 IPR018451 GO:0007165
Cma17g00399 650 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 526 588 IPR000727 -
Cma17g00399 650 PANTHER SERINE/THREONINE KINASE 260 372 - -
Cma17g00399 650 Gene3D Phosphorylase Kinase; domain 1 14 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01096 Cma-Chr16:8437627 Cma17g00399 Cma-Chr17:2265968 9.79E-107 dispersed
Cma17g00399 Cma-Chr17:2265968 Cma11g00469 Cma-Chr11:2275952 6.84E-106 dispersed
Cma17g00399 Cma-Chr17:2265968 Cma17g00401 Cma-Chr17:2289176 4.05E-23 proximal
Cma14g01555 Cma-Chr14:11700857 Cma17g00399 Cma-Chr17:2265968 2.47E-41 wgd
Cma17g00399 Cma-Chr17:2265968 Cma06g01592 Cma-Chr6:9929518 4.37E-42 wgd
Cma17g00399 Cma-Chr17:2265968 Cma08g01309 Cma-Chr8:7909110 9.35E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69228 PF00069 Pkinase 2.80E-64 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00399 K08494 K07198 csv:116404531 495.352