Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00425 ATGGATCGGCGGGATCCGATGGCGTTATCTGGGTCACAATCTTTCTATATACAGAGGGGAATGAGTAACTCTGGCTCAGGAGGACAGGGGTTGCGTTCCTCTCCTAACCCAAATGTGGCATTTCAGACCAACACTAGTGGGAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCCTTTCACCTTATGGTGGCAATGTTGGGGCTCAATCTGGTGGAATGATGGGTAGCGAACCGGTGAAACGGAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTTTCTCCTTCCCCTTCTGCTGTAAATCCAGCCATTGTAGGTTCTTCCCCGAAGCGGGGAAGGGGTCGCCCGCCTGGCTCGGGAAAGAAGCAACAATTGGCTTCTCTTGGTGAAAAACTTTCTGGGTCAGCTGGGATGGGTTTTACTCCACATGTTATCACCATTGGAGTAGGAGAAGATATTGCTGCCAAAATTACGTCCTTTTCGCAGCAGGGACCGAGAGTTGTCTGCATCTTGTCAGCAAATGGTGCTGTCTCTACTGTTACTCTTCGTCAGCCTTCGAGTTCGGGAGGCACCGTCACATACGAGGGGCGTTTTGAGATAATATGTCTATCAGGCTCATATGCTCTTGGAGAAGCTGTTGGTTCTAGGAACCGCAGTGGTGGTCTGAGTGTCTCCCTTGCCAGCCCTGATGGTCGTGTCGTTGGTGGTGGAGTAGGAGGAGCACTTATCGCAGCAACCCCGGTTCAGGTGATCGTAGGGAGCTTCATGTGGGGTGGTTCGAAGTCGAAGTACAAGAAGAGGGAAGCTATTGAAGGCGTGATCGACTCGGATCAACAGGCAGTAGATCATGCAGTTGCTATAGCAAACGTGCAGCAGAATCAGAATCTGACATCGACATCCTCAGTTAGTCCAGGGCGTGTTAGGGTTAGGTTGAGTCAAAATGTCATCTTCTTCTTCGCGTGTTTCTCTTTGCCGGCGTTCGTCCCTCCTACAACTCGCGTACAATGGCGCCGGCGAGCCTCGACTGCGTCGAACGACGGCGCGACAGAGGAACGATCGGTGGCAGATTGA 1098 52.28 MDRRDPMALSGSQSFYIQRGMSNSGSGGQGLRSSPNPNVAFQTNTSGNNVGSGLPMDPNPALSPYGGNVGAQSGGMMGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAIVGSSPKRGRGRPPGSGKKQQLASLGEKLSGSAGMGFTPHVITIGVGEDIAAKITSFSQQGPRVVCILSANGAVSTVTLRQPSSSGGTVTYEGRFEIICLSGSYALGEAVGSRNRSGGLSVSLASPDGRVVGGGVGGALIAATPVQVIVGSFMWGGSKSKYKKREAIEGVIDSDQQAVDHAVAIANVQQNQNLTSTSSVSPGRVRVRLSQNVIFFFACFSLPAFVPPTTRVQWRRRASTASNDGATEERSVAD 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2504984 2509365 - CmaCh17G004250.1 Cma17g00425 312320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00425 365 MobiDBLite consensus disorder prediction 1 136 - -
Cma17g00425 365 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Cma17g00425 365 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Cma17g00425 365 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Cma17g00425 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 302 IPR039605 GO:0003680
Cma17g00425 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 302 - -
Cma17g00425 365 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677
Cma17g00425 365 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Cma17g00425 365 CDD DUF296 150 264 IPR005175 -
Cma17g00425 365 MobiDBLite consensus disorder prediction 98 112 - -
Cma17g00425 365 MobiDBLite consensus disorder prediction 11 53 - -
Cma17g00425 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Cma17g00425 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 273 - -
Cma17g00425 365 Gene3D - 151 282 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00912 Cma17g00425 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01152 Cma-Chr16:8858536 Cma17g00425 Cma-Chr17:2504984 1.02E-57 dispersed
Cma17g00425 Cma-Chr17:2504984 Cma02g01510 Cma-Chr2:8610196 9.56E-67 dispersed
Cma17g00425 Cma-Chr17:2504984 Cma08g00912 Cma-Chr8:5684400 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00425 - - csv:101203138 539.65