Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00437 ATGGACGTGGGTTTGGCTTTGGTTATTGTAATGGCGGTGACGGCGTATCTTCTGTGGTTTACGTTCATTTCCCGGTCGTTAAAAGGGCCTCAAATGTGGCCGTTGCTCGGCAGTCTGCCGGGGTTGATCGAGAATTGCGACCGTTTACACGACTGGATCTCCGACAACCTCCGAGCCTGCGGCGGAACTTATCAAACATGCATATGGGCCTTCCCTTACTTCGCTACAAAACAGGGCCTCGTGACTGTCACGTGCGACCCGAGAAATCTGGAGCATATACTCAAGACCCGATTCGATAATTACCCTAAGGGCCCCACTTGGCAAGCTGTCTTTCACGAGCTACTTGGCCAAGGTATTTTTAATTCTGATGGTGACACGTGGCTCTTCCAGAGAAAAACTGCTGCCTTGGAATTTACTACTAGGACCCTTCGTCAAGCCATGGCTCGATGGGTTAGCCGAGCTATTAAATTGAGGTTTTGTCCTATTCTTAAACAAGCCGAGCTTAATTCTCAGCCGATTGATCTTCAGGATGTGTTGTTGCGGCTTACTTTTGATAATATTTGCGGCTTGGCTTTTGGGAAGGATCCTATGACTTGTGCGCCGGGTTTCCCTGAAAATGGCTTTGCTATGGCTTTTGATCGAGCCACTGAGGCTTCGTTGCAACGGTTTATTTTGCCGGAAGTTCTTTGGAAATTTAAAAAGTGGCTTCGGCTTGGTATGGAAGTCAGCTTGAGCCGGAGTCTAGTTCACATCGAGGAGTATTTATCCAGTGTTATTGATTCACGTAAGCTCGAGTTGCTGAATCAGCTTAAAGACTCGACCCCACATGATGATTTATTGTCACGTTTCATGAAGAAGAAGGAAAGTAATTACTCCAACGCGTTCCTTCGCCATGTGGCGCTTAATTTCATCCTAGCTGGACGGGACACGTCATCCGTTGCGCTGAGCTGGTTCTTCTGGTTGGTCACATTAAACCCACAAATTGAAGAAAAAATCCTCCGCGAGATCTGCACCGTTCTGATTGAGACACGTGGCAATAACATCCAATCATGGCTGGATGAGCCGTTAGGATTTGAAGAGATCGACCGTCTGATTTATCTCAAAGCCGCTCTCACCGAAACCCTTAGACTGTACCCGTCGGTGCCGGAGGATTCAAAGCACGTCGTCGCCGACGACATTCTTCCCGACGGAACCTTCGTTCCGGCAGGATCGTCGGTGACTTATTCAATCTATTCCACCGGAAGAATGAAGTCGACGTGGGGAGAAGACTGCCTCGAATTCCGGCCGGAGCGGTGGCTGACGGCGGACGGGAAGAAATTCATACCGTACGATCCGTACAAATTCGTAGCGTTCAATGCAGGGCCAAGGATCTGCTTGGGGAAGGATTTGGCGTATTTACAGATGAAGTCGATAGCGGCGGCGGTACTTCTCCGACACCGGCTGACGGTGGCGGCAGGTCATAAGGTGGAGCAGAAAATGTCGTTGACGCTGTTTATGAAGTACGGGCTGAAGGTGAACGTTCACCGGAGGGAGTTGGAGGGAATAGTGGAAATCTTAAGGGGCAAAAACGGAAATTCCCAAGGGAAGGATACTCCGTTAGTCGCCGTTGTGAACTGTAACGGCGGGTGTAACGGTTTTAACGACGTACAACGCTAA 1656 49.52 MDVGLALVIVMAVTAYLLWFTFISRSLKGPQMWPLLGSLPGLIENCDRLHDWISDNLRACGGTYQTCIWAFPYFATKQGLVTVTCDPRNLEHILKTRFDNYPKGPTWQAVFHELLGQGIFNSDGDTWLFQRKTAALEFTTRTLRQAMARWVSRAIKLRFCPILKQAELNSQPIDLQDVLLRLTFDNICGLAFGKDPMTCAPGFPENGFAMAFDRATEASLQRFILPEVLWKFKKWLRLGMEVSLSRSLVHIEEYLSSVIDSRKLELLNQLKDSTPHDDLLSRFMKKKESNYSNAFLRHVALNFILAGRDTSSVALSWFFWLVTLNPQIEEKILREICTVLIETRGNNIQSWLDEPLGFEEIDRLIYLKAALTETLRLYPSVPEDSKHVVADDILPDGTFVPAGSSVTYSIYSTGRMKSTWGEDCLEFRPERWLTADGKKFIPYDPYKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVAAGHKVEQKMSLTLFMKYGLKVNVHRRELEGIVEILRGKNGNSQGKDTPLVAVVNCNGGCNGFNDVQR 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2600115 2601770 - CmaCh17G004370.1 Cma17g00437 312332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00437 551 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Cma17g00437 551 PANTHER CYTOCHROME P450 7 523 - -
Cma17g00437 551 PANTHER CYTOCHROME P450 86A2 7 523 - -
Cma17g00437 551 Gene3D Cytochrome P450 24 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 SUPERFAMILY Cytochrome P450 21 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 Pfam Cytochrome P450 28 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00437 551 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00855 Cma-Chr5:5843900 Cma17g00437 Cma-Chr17:2600115 4.44E-128 dispersed
Cma13g00080 Cma-Chr13:600631 Cma17g00437 Cma-Chr17:2600115 0 dispersed
Cma17g00437 Cma-Chr17:2600115 Cma17g00985 Cma-Chr17:7250967 7.61E-149 dispersed
Cma17g00437 Cma-Chr17:2600115 Cma01g00654 Cma-Chr1:3418591 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00437 K15398 - csv:101221526 1066.6