Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00446 | ATGACTTGTCTTCTTAGAAACCAAGTTAACCATGGCTGCATTCTCCTCCTCCTCCTCCTCCTCTCTCTGCCACTTCTCTCCGTTGCCCTCTCCGACGCCGAAGCTTCATTCATCGTTCGCCGCCAACTTAAAGCTTTAAAAGAATACGAAAACCTCCCAGATGACTACAAATACGAACTCGACATTCCCGACACTTTCCCTAATGAGAGGTTGAAAAAGGCCTACATCGCCCTTCAAGCTTGGAAATTAGCCATTTACTCCGACCCTCTAAACATGACCGCCAATTGGGTTGGTGCCGATGTCTGCTCTTACGTCGGCGTCTTTTGTACCACGGCGCTTGATGACTCAACCATTGAAGTTGTCGCCGGCATTGATTTGAACCATGGCGATATTGCCGGCCATTTGGTGCCGGAATTAGGCCTCATCACCGATTTAGCTCTGTTCCATATTAACTCCAATAGATTCTGTGGGATCGTTCCTTATAGCTTCTCCCAGCTCACCCTCATGTTTGAATTTGATATCAGCACTAACCGCTTCGTCGGCCATTTCCCTGAGGTTGTTCTTGAATGGTCCGTCGCTAAGTACCTCGATCTCAGGTTCAATAACTTCGAAGGAGCAATCCCACCTGCTCTGTTCACCAAGGAATTCGATGCCATTTTCCTAAACAATAACAGATTCACTTCCTTCATCCCACATACCATCGGAAACTCCACCGTCTCTGTCGTGTCCTTCGCCTACAACGAGTTCCAGGGCTGCATTCCTAACACCATCGGCCATATGCCCAACCTCAACCAGGCCCTGTTCCTCGGCAACAACCTCAGCGGCTGTTTCCCTTACGAGATGGGACAGCTTGTGAATATGACACTTATTGATGTTAGTTACAATTTCTTTGTCGGCGAGCTGCCTAAATCATTGCCGGGGCTGCAGAGTTTGGAGGTTTTGGATGTTAGTAATAATGAATTGAGGGGCTCTGTTTTAGGGGGTGTTTGCGAGTTGCCTAAATTGACTTACTTTAATTGTTCGAACAATTATTTTAGTGAGGAAGATGCGGTGTGTGTTGGGTCTAAAGAATCTAAGAATTCTTTTGATGATGTTGGGAATTGTTTGGGGAATCGACCGGAGCAGAGAGATGCGGCCAAGTGTAGCTCTGTTTTGGATAAACCCATGGAGTGTGGTGGTTGTGCTGATGATCCATTTGTTCAGTCACCATCGCCCAGATTTAGGCCGCCGCCGCCACCATCTGTGGGTGAAATCCCTTACATAGAAGTTGGGTCTCCACCATCTCCGATTGTGTTTCCACCACCAACATCTCACAAACCAACGCCCTCTGTTCCATCCTCACCGCCACCAGTCCACTCTCCACCACCCCCCGACCACTCTCCACCACCACCCGACCACTCTCCTCCACCACCGGTCCACTCCCCACCACCTCCCGTCTACTCTCCGCCACCCCCCGTCTACTCTCCGCCGCCACCAGAACAATCTCCACCCCCACCTGTTTACTCTCCACCCCCACCAGAACAATCTCCACCCCCACCTGTTTACTCTCCACCCCCACCAGAACAATCTCCACCCCCACCCATTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCACTCTCCGCCGCCACCAGAACAATCTCCGCCTCCACCAGAGCAATCTCCGCCGCCACCAGAGCAATCTCCGCCGCCACCAGAGCAATCTCCGCCGCCACCAGAGCAATCTCCGCCTCCACCAGAGCAATCTCCGCCTCCACCAGAACAATCTCCGCCTCCACCAGAACAATCTCCGCCTCCACCAGAACAATCTCCACCTCCTGCGATCGAAACTCCTCCTCCTGCTCCCGATTCTTCTCCACCGCCAGCATTCGAGGACTTAATTCTCCCACCAAATATCGGCTTCCAGTATTCATCGCCGCCTCCACCACAGTTTCCTGGCTACTAA | 2082 | 52.31 | MTCLLRNQVNHGCILLLLLLLSLPLLSVALSDAEASFIVRRQLKALKEYENLPDDYKYELDIPDTFPNERLKKAYIALQAWKLAIYSDPLNMTANWVGADVCSYVGVFCTTALDDSTIEVVAGIDLNHGDIAGHLVPELGLITDLALFHINSNRFCGIVPYSFSQLTLMFEFDISTNRFVGHFPEVVLEWSVAKYLDLRFNNFEGAIPPALFTKEFDAIFLNNNRFTSFIPHTIGNSTVSVVSFAYNEFQGCIPNTIGHMPNLNQALFLGNNLSGCFPYEMGQLVNMTLIDVSYNFFVGELPKSLPGLQSLEVLDVSNNELRGSVLGGVCELPKLTYFNCSNNYFSEEDAVCVGSKESKNSFDDVGNCLGNRPEQRDAAKCSSVLDKPMECGGCADDPFVQSPSPRFRPPPPPSVGEIPYIEVGSPPSPIVFPPPTSHKPTPSVPSSPPPVHSPPPPDHSPPPPDHSPPPPVHSPPPPVYSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPIYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVHSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPAIETPPPAPDSSPPPAFEDLILPPNIGFQYSSPPPPQFPGY | 693 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 2660615 | 2662696 | + | CmaCh17G004460.1 | Cma17g00446 | 312341 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00446 | 693 | MobiDBLite | consensus disorder prediction | 403 | 417 | - | - | |
Cma17g00446 | 693 | PRINTS | Proline rich extensin signature | 397 | 413 | - | - | |
Cma17g00446 | 693 | PRINTS | Proline rich extensin signature | 433 | 445 | - | - | |
Cma17g00446 | 693 | PRINTS | Proline rich extensin signature | 450 | 471 | - | - | |
Cma17g00446 | 693 | PRINTS | Proline rich extensin signature | 471 | 487 | - | - | |
Cma17g00446 | 693 | PANTHER | POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 | 517 | 599 | - | - | |
Cma17g00446 | 693 | PANTHER | POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 | 452 | 528 | - | - | |
Cma17g00446 | 693 | PANTHER | POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 | 10 | 392 | - | - | |
Cma17g00446 | 693 | PANTHER | POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 | 489 | 570 | - | - | |
Cma17g00446 | 693 | PANTHER | POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 | 400 | 492 | - | - | |
Cma17g00446 | 693 | Gene3D | Ribonuclease Inhibitor | 112 | 369 | IPR032675 | - | |
Cma17g00446 | 693 | MobiDBLite | consensus disorder prediction | 426 | 672 | - | - | |
Cma17g00446 | 693 | SUPERFAMILY | L domain-like | 84 | 351 | - | - | |
Cma17g00446 | 693 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 517 | 599 | - | - | |
Cma17g00446 | 693 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 400 | 492 | - | - | |
Cma17g00446 | 693 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 452 | 528 | - | - | |
Cma17g00446 | 693 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 10 | 392 | - | - | |
Cma17g00446 | 693 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 489 | 570 | - | - | |
Cma17g00446 | 693 | MobiDBLite | consensus disorder prediction | 402 | 693 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00898 | Cma-Chr8:5563777 | Cma17g00446 | Cma-Chr17:2660615 | 1.17E-178 | dispersed | |
Cma09g00199 | Cma-Chr9:826607 | Cma17g00446 | Cma-Chr17:2660615 | 9.63E-145 | dispersed | |
Cma14g01740 | Cma-Chr14:12740774 | Cma17g00446 | Cma-Chr17:2660615 | 3.36E-104 | dispersed | |
Cma17g00446 | Cma-Chr17:2660615 | Cma05g01334 | Cma-Chr5:10085979 | 1.41E-116 | dispersed | |
Cma17g00446 | Cma-Chr17:2660615 | Cma08g00896 | Cma-Chr8:5557269 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00446 | - | - | cpep:111806609 | 752.666 |