Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00446 ATGACTTGTCTTCTTAGAAACCAAGTTAACCATGGCTGCATTCTCCTCCTCCTCCTCCTCCTCTCTCTGCCACTTCTCTCCGTTGCCCTCTCCGACGCCGAAGCTTCATTCATCGTTCGCCGCCAACTTAAAGCTTTAAAAGAATACGAAAACCTCCCAGATGACTACAAATACGAACTCGACATTCCCGACACTTTCCCTAATGAGAGGTTGAAAAAGGCCTACATCGCCCTTCAAGCTTGGAAATTAGCCATTTACTCCGACCCTCTAAACATGACCGCCAATTGGGTTGGTGCCGATGTCTGCTCTTACGTCGGCGTCTTTTGTACCACGGCGCTTGATGACTCAACCATTGAAGTTGTCGCCGGCATTGATTTGAACCATGGCGATATTGCCGGCCATTTGGTGCCGGAATTAGGCCTCATCACCGATTTAGCTCTGTTCCATATTAACTCCAATAGATTCTGTGGGATCGTTCCTTATAGCTTCTCCCAGCTCACCCTCATGTTTGAATTTGATATCAGCACTAACCGCTTCGTCGGCCATTTCCCTGAGGTTGTTCTTGAATGGTCCGTCGCTAAGTACCTCGATCTCAGGTTCAATAACTTCGAAGGAGCAATCCCACCTGCTCTGTTCACCAAGGAATTCGATGCCATTTTCCTAAACAATAACAGATTCACTTCCTTCATCCCACATACCATCGGAAACTCCACCGTCTCTGTCGTGTCCTTCGCCTACAACGAGTTCCAGGGCTGCATTCCTAACACCATCGGCCATATGCCCAACCTCAACCAGGCCCTGTTCCTCGGCAACAACCTCAGCGGCTGTTTCCCTTACGAGATGGGACAGCTTGTGAATATGACACTTATTGATGTTAGTTACAATTTCTTTGTCGGCGAGCTGCCTAAATCATTGCCGGGGCTGCAGAGTTTGGAGGTTTTGGATGTTAGTAATAATGAATTGAGGGGCTCTGTTTTAGGGGGTGTTTGCGAGTTGCCTAAATTGACTTACTTTAATTGTTCGAACAATTATTTTAGTGAGGAAGATGCGGTGTGTGTTGGGTCTAAAGAATCTAAGAATTCTTTTGATGATGTTGGGAATTGTTTGGGGAATCGACCGGAGCAGAGAGATGCGGCCAAGTGTAGCTCTGTTTTGGATAAACCCATGGAGTGTGGTGGTTGTGCTGATGATCCATTTGTTCAGTCACCATCGCCCAGATTTAGGCCGCCGCCGCCACCATCTGTGGGTGAAATCCCTTACATAGAAGTTGGGTCTCCACCATCTCCGATTGTGTTTCCACCACCAACATCTCACAAACCAACGCCCTCTGTTCCATCCTCACCGCCACCAGTCCACTCTCCACCACCCCCCGACCACTCTCCACCACCACCCGACCACTCTCCTCCACCACCGGTCCACTCCCCACCACCTCCCGTCTACTCTCCGCCACCCCCCGTCTACTCTCCGCCGCCACCAGAACAATCTCCACCCCCACCTGTTTACTCTCCACCCCCACCAGAACAATCTCCACCCCCACCTGTTTACTCTCCACCCCCACCAGAACAATCTCCACCCCCACCCATTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCACTCTCCGCCGCCACCAGAACAATCTCCGCCTCCACCAGAGCAATCTCCGCCGCCACCAGAGCAATCTCCGCCGCCACCAGAGCAATCTCCGCCGCCACCAGAGCAATCTCCGCCTCCACCAGAGCAATCTCCGCCTCCACCAGAACAATCTCCGCCTCCACCAGAACAATCTCCGCCTCCACCAGAACAATCTCCACCTCCTGCGATCGAAACTCCTCCTCCTGCTCCCGATTCTTCTCCACCGCCAGCATTCGAGGACTTAATTCTCCCACCAAATATCGGCTTCCAGTATTCATCGCCGCCTCCACCACAGTTTCCTGGCTACTAA 2082 52.31 MTCLLRNQVNHGCILLLLLLLSLPLLSVALSDAEASFIVRRQLKALKEYENLPDDYKYELDIPDTFPNERLKKAYIALQAWKLAIYSDPLNMTANWVGADVCSYVGVFCTTALDDSTIEVVAGIDLNHGDIAGHLVPELGLITDLALFHINSNRFCGIVPYSFSQLTLMFEFDISTNRFVGHFPEVVLEWSVAKYLDLRFNNFEGAIPPALFTKEFDAIFLNNNRFTSFIPHTIGNSTVSVVSFAYNEFQGCIPNTIGHMPNLNQALFLGNNLSGCFPYEMGQLVNMTLIDVSYNFFVGELPKSLPGLQSLEVLDVSNNELRGSVLGGVCELPKLTYFNCSNNYFSEEDAVCVGSKESKNSFDDVGNCLGNRPEQRDAAKCSSVLDKPMECGGCADDPFVQSPSPRFRPPPPPSVGEIPYIEVGSPPSPIVFPPPTSHKPTPSVPSSPPPVHSPPPPDHSPPPPDHSPPPPVHSPPPPVYSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPIYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVHSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPAIETPPPAPDSSPPPAFEDLILPPNIGFQYSSPPPPQFPGY 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2660615 2662696 + CmaCh17G004460.1 Cma17g00446 312341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00446 693 MobiDBLite consensus disorder prediction 403 417 - -
Cma17g00446 693 PRINTS Proline rich extensin signature 397 413 - -
Cma17g00446 693 PRINTS Proline rich extensin signature 433 445 - -
Cma17g00446 693 PRINTS Proline rich extensin signature 450 471 - -
Cma17g00446 693 PRINTS Proline rich extensin signature 471 487 - -
Cma17g00446 693 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 517 599 - -
Cma17g00446 693 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 452 528 - -
Cma17g00446 693 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 10 392 - -
Cma17g00446 693 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 489 570 - -
Cma17g00446 693 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 400 492 - -
Cma17g00446 693 Gene3D Ribonuclease Inhibitor 112 369 IPR032675 -
Cma17g00446 693 MobiDBLite consensus disorder prediction 426 672 - -
Cma17g00446 693 SUPERFAMILY L domain-like 84 351 - -
Cma17g00446 693 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 517 599 - -
Cma17g00446 693 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 400 492 - -
Cma17g00446 693 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 452 528 - -
Cma17g00446 693 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 392 - -
Cma17g00446 693 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 489 570 - -
Cma17g00446 693 MobiDBLite consensus disorder prediction 402 693 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00898 Cma-Chr8:5563777 Cma17g00446 Cma-Chr17:2660615 1.17E-178 dispersed
Cma09g00199 Cma-Chr9:826607 Cma17g00446 Cma-Chr17:2660615 9.63E-145 dispersed
Cma14g01740 Cma-Chr14:12740774 Cma17g00446 Cma-Chr17:2660615 3.36E-104 dispersed
Cma17g00446 Cma-Chr17:2660615 Cma05g01334 Cma-Chr5:10085979 1.41E-116 dispersed
Cma17g00446 Cma-Chr17:2660615 Cma08g00896 Cma-Chr8:5557269 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00446 - - cpep:111806609 752.666