Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00451 ATGGAGCCCCGTCCTTTTAATCACCACATCAGGGGAGTGCCCACTCATGGGGGTCAATACATTCAGTACAATATCTATGGCAATCTATTTGAAGTTCCTAGGAAGTATATTCCTCCCATAAGGCCTGTTGGAAGAGGAGCTTATGGAATTGTCTGTGCTGCTTTGAATTCAGAAACAAATGAAGAGGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAATAGAATTGACGCTAAAAGAACCTTGCGAGAAATCAAGCTTCTTCTACACATGGAACATGATAATATTATTGGTCTTGAAGATATTATAAGACCTCCTCAGAAGGAGAATTTCAATGATGTATACCTTGTTTATGAATTGATGGATACTGATCTGAATCAGATAATACGGTCCAACGAATCATTGACTGATGAACATTGTCGGTACTTTGTGTACCAGTTGTTACGAGGGCTAAAATACGTACATTCTGCTAACGTTCTACACCGTGATTTGAAACCGAGCAATTTGTTCGTGAATGCAAATTGTGACCTGAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACTGATTTTATGACTGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAATTGCTTCTTAATTGTTCAGAATACAGTGGAGCAATAGATATCTGGTCTGTTGGCTGTATATTTGGTGAAATTATGCACAGACAACCACTGTTTCCTGGAAGAGACTATGTTCATCAGCTAAAACTTATTACTGAGCTCATTGGATCACCCGATGACTCGAGCCTCGGATTCTTACGAAGCGACAATCCACAAAAATATTTTAGACTTCTTCCTCACTTCCCCAGGCAACAGTTTTCCACTCGATTTCCCACCATGTCTCCTGCTGCAATAGACTTGCTGGAGAAGATGCTCGTCTTCGATCCTACGAAGCGCATTACAGTTGATGAGGCGCTGTGCCATCCTTACTTAGCACCTCTTCATGATACCAATGTGGAGCCAGTATGTCCAAGGCCCTTCAGTTTTGATTTCGAGCAGCCATCGTATACCGAAGAACACATTAAGGAACTTGTATGGAGAGAATCCATGAAGTTCAACCCGGATCCCGCTAACTGA 1113 41.78 MEPRPFNHHIRGVPTHGGQYIQYNIYGNLFEVPRKYIPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLLHMEHDNIIGLEDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNESLTDEHCRYFVYQLLRGLKYVHSANVLHRDLKPSNLFVNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYSGAIDIWSVGCIFGEIMHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPQKYFRLLPHFPRQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVDEALCHPYLAPLHDTNVEPVCPRPFSFDFEQPSYTEEHIKELVWRESMKFNPDPAN 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2685984 2691001 - CmaCh17G004510.1 Cma17g00451 312346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00451 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Cma17g00451 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 14 369 - -
Cma17g00451 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cma17g00451 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 369 - -
Cma17g00451 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma17g00451 370 CDD STKc_TEY_MAPK 30 366 - -
Cma17g00451 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Cma17g00451 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Cma17g00451 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00451 370 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00451 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Cma17g00451 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01248 Cma-Chr15:7927658 Cma17g00451 Cma-Chr17:2685984 0 dispersed
Cma17g00451 Cma-Chr17:2685984 Cma08g00890 Cma-Chr8:5512522 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69230 PF00069 Pkinase 5.40E-69 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00451 K20600 - csv:101215189 696.812