Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00480 ATGAAGGCCATGCCCTTTCCTTACCCTTTTGATGACCTTCGTCCAAATGGGGTTTTGAATTTTTCCTCTGTTTCCGATTCTTCGCCGCCTACACTCCGCCGTCACAACCACCGTCAACACTGGAGTTCTACTGATAACACTAATCTGCTCAAACAGATTTGCTATGTGGGTGCTGCTGAACCCACCTCTGTTCTCGACACTAGAAGAAGCCCAAGCCCTCCCACTTCCACTTCCACACTGTCTTCCTCTCTCGGCGGCGGCGGCGGCGGCAGCGGCGGTGGTGGTACTGCCTCCACCGACACTACCGTGGCGGCGCCGCAGTCTTCTCTCCCTGGAAACCCTTCTCCTTTAGATAAATGTGGCGGCGGAGGCGGAGGCGGCCTTGGAATGGATGATTGGGAGAGCGTTTTGCCGGAATCCCCTGGGCAAGGACCCTCCATTCTTGGGTTAATTATGGGCGATGTGGAAGACCCATCTCTTGGATTGAATAAACTCCTGCAGAGCGGCGGTGGTGGTGGCGGTATTGGTGGTGGTGGTGGTGATTCTCATCTGGACTTGGAATTCTCCGGGAGTTTTTCCGGTGTCGATCATGGGTTGGTCTTCGAACCCAATACTCTCGCCGGTGAGTCCATTGTCGACCCTTCTCTCCAAGCCCCATCTTATGCTAGACTTTCCGCCGCCGTGTCGAACTCGAACGCCATGTTTTCCGGCGTGTTTCAGAATCAAAATCAGCTGTCGGAAACCGTTGACGAGAAGCCACAGATTCTCAATTCTCCCCAAGTTATGATGAATCAAAATCAAACCCAGTTCACTCATAATCCACCTCTGTTTATGCCTCTTCCTTTTGCCTCTCCCGGCCAAGATCACCACCACTTCCTCGGTGGTGTCCCGCGGACAAAACGGTTCAATTCCGGTCCGATTCCGCCAAATTATCCAGTGAAATCACCATTTCTTGATTCGGGTCAAGAAAATATCAATCGCAGACAACAACAACAACAACAGACCCAACAAGTTCAGTTGTTTCCTCATCAGCAGCAGAGGCCATCCATGGCGGCCTTGGCCAAACAAAAAATGGTGAATGAAGACATAGTGAATCAACAACTCCAACAGGGCATCTCCGACCAGCTATTCAAGGCCGTAGAGCTGATCGAAACAGGCAATTCAGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCTTCCCCTATTGGGAAGCCCTTCCAAAGGGCTGCTTTCTACTTCAAGGAGGCCTTGCAATCGCTCCTTCAAAACCCATCAAACCCCTCCAATCCTTCCCCTCTCAGCATCATTTTCAAAATCGCCGCCTACAAATCCTTCTCCGAAGTCTCCCCTGTTCTCCAATTTGCCAATTTCACCTCAAACCAAGCCCTCCTTGAGGCCTTTAACGGCTCCGGTCGGATTCACATCATCGACTTCGACATCGGCTATGGCGGTCAATGGGCTTCTCTAATGCAGGAGCTTGCCTTAAGAGGACCCCCATTTCTCAAAATCACTGCCTTTGCTTCCACTTCCACACACGATGATTTCGAGCTCGGTTTCACTCAAGAAAACCTCAAGAATTTCGCTAACGATCTCAACATTGGGTTCGAGCTCGAAATCATAAACATCGAGTCTCTCAATTCTGGTTCATGGCCTCTAGCTCTTAATGTCTCTGAAAACGAAGCCATTGCAGTGAATCTCCCCGTTGGTTCCCTATCATTGCCAATGATCCTCCGTTTCATAAAGCATCTTAACCCGAAAATCGTAGTGTCTGTCGACCGAGGCTGCAGCCGAGTCGATGCGCCATTCCCCCACCGTGTTATCCACGGTCTGCACTCATACTCGGCGCTGCTCGAATCCATGGAAGCTGTAACAGTAAATATGGATGCCCAGCTGAAAATTGAAAGGTACTTGGTGCAGCCATGTATCGAAAAAGTGGTGACGAGTTCTCAATGTTCGAACGAGAGGCTGCTGCCATTGAAATCGATGTTTTTGTCATCCGGGTTTTCGCCATTGACTTTCAGTAACTTCACGGAGTCGCAGGCGGAGTGTCTGCTACAGAGGACGCCAGTTCAGGGGTTCCATATCGACAAGAGCCACTCCTCGCTTGTTCTATGCTGGCACCGGAAGGAGCTCGTTTCAATCTCTGCTTGGAGGTCTTGA 2172 50.87 MKAMPFPYPFDDLRPNGVLNFSSVSDSSPPTLRRHNHRQHWSSTDNTNLLKQICYVGAAEPTSVLDTRRSPSPPTSTSTLSSSLGGGGGGSGGGGTASTDTTVAAPQSSLPGNPSPLDKCGGGGGGGLGMDDWESVLPESPGQGPSILGLIMGDVEDPSLGLNKLLQSGGGGGGIGGGGGDSHLDLEFSGSFSGVDHGLVFEPNTLAGESIVDPSLQAPSYARLSAAVSNSNAMFSGVFQNQNQLSETVDEKPQILNSPQVMMNQNQTQFTHNPPLFMPLPFASPGQDHHHFLGGVPRTKRFNSGPIPPNYPVKSPFLDSGQENINRRQQQQQQTQQVQLFPHQQQRPSMAALAKQKMVNEDIVNQQLQQGISDQLFKAVELIETGNSVLAQGILARLNHQLSSPIGKPFQRAAFYFKEALQSLLQNPSNPSNPSPLSIIFKIAAYKSFSEVSPVLQFANFTSNQALLEAFNGSGRIHIIDFDIGYGGQWASLMQELALRGPPFLKITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEIINIESLNSGSWPLALNVSENEAIAVNLPVGSLSLPMILRFIKHLNPKIVVSVDRGCSRVDAPFPHRVIHGLHSYSALLESMEAVTVNMDAQLKIERYLVQPCIEKVVTSSQCSNERLLPLKSMFLSSGFSPLTFSNFTESQAECLLQRTPVQGFHIDKSHSSLVLCWHRKELVSISAWRS 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2969066 2971237 + CmaCh17G004800.1 Cma17g00480 312375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00480 723 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 722 IPR005202 -
Cma17g00480 723 MobiDBLite consensus disorder prediction 21 44 - -
Cma17g00480 723 MobiDBLite consensus disorder prediction 62 142 - -
Cma17g00480 723 Pfam GRAS domain family 374 722 IPR005202 -
Cma17g00480 723 ProSiteProfiles GRAS family profile. 363 722 IPR005202 -
Cma17g00480 723 MobiDBLite consensus disorder prediction 65 86 - -
Cma17g00480 723 MobiDBLite consensus disorder prediction 94 114 - -
Cma17g00480 723 PANTHER SCARECROW-LIKE PROTEIN 6 37 722 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00779 Cma17g00480 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01144 Cma-Chr16:8784996 Cma17g00480 Cma-Chr17:2969066 1.01E-146 dispersed
Cma17g00480 Cma-Chr17:2969066 Cma04g02984 Cma-Chr4:19554944 1.12E-40 dispersed
Cma17g00480 Cma-Chr17:2969066 Cma08g00863 Cma-Chr8:5297563 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36650 PF03514 GRAS 1.40E-92 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00480 - - csv:101214718 1099.73