Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00500 | ATGTCGTTGAGTACCCAAATTGAAAGCCTTTGGGTCTTCGCGTTGGCTTCCAAATGCTCCTCTCTCACCAAAGACACCCTCCTTTGCTCACTCCTCTTTCTTCTTCTTATTTGCTTTCTCCTTTCCATTTTCCACTGGGCCCATCCTGGCGGCCCTGCTTGGGGCTCCCACGGATACTACCGCCGCACCGCCGCCGTCATCCCTGGCCCAAGAGGCCTCCCACTCATCGGGAGCATGACCTTGATGATGGGTCTGGCCCACCAGCGAATCGCCGCCATCGCCAAATCCCTAGGAGCTACCCGTCTCATGGCTTTCTCACTCGCCTACACTCGCGTCATTGTCACTTCTCATCCCGACGTCGCTAAAGAGATCCTTAACAGCTCCGTCTTTGCTGACCGTCCGATTAAGGAATCTGCTTACTCTTTGATGTTCAATCGCGCCATTGGTTTCGCCCCTTATGGGCTCTACTGGCGGACCCTCCGCCGTATCGCTTCCCACCATCTCTTCTCCCCTAAACAAATCAAATCCTCTGAGTCACACCGCCGCCATATCGCTTCCCAAATGCTCGCAATCTTCTCTTCCACCACCACCTCCCCCCACCGCGTCCGCGACACGCTCAAACGAGCCTCTTTAAATAGCATGATGGCCTCCGTCTTCGGCCGCTTTTATACCCTCACCGACTCCAATAACGAAGCCGAACAACTCCAAACCCTTGTTGCCGAAGGCTACGATTTATTGGGCCTTCTCAACTGGTCCGACCATCTCCCCTTCTTAGCCGATTTCGACCCACAGAGAATCCGGTTCAGATGCTCCCAATTGGTCCCCCAAGTGAACCGCCTCGTCGGCCGGATCATCGCTGAACACCGGTCCAATTCAACCTCCGATCAAATCACGGATTTCGTCGACGTTCTTCTCTCTCTTCAACAATCTGACAATCTCTCTGACTCCGACATCATAGCCGTTCTTTGGGAAATGATATTTAGGGGTACGGACACGACGGCGGTATTAATGGAATGGATTCTCGCCAGGATGGTTGTTCACACGGAGGTGCAAGAAAAGGTTCAATCGGAACTAGACACGGTGGTTGGGAGATCACGTGCCGTGGTGGAATCCGACATTCCGTCCCTGGTTTATCTAACCGCGGTGGTTAAAGAAGTTCTAAGGTTACACCCACCGGGCCCACTTTTATCCTGGGCTCGCTTAGCCATCACTGACACAACCATAGACGGTCACCACGTGCCTAAGGGCACCACTGCCATGGTTAACATGTGGTCGATAGCACGAGACCCACAGGTCTGGTCAGACCCACTTGAATTTAAACCCGAGAGGTTTGTGTCTGGTGGCGCTGACGTGGAGTTTTCAGTTATGGGTTCAGATCTACGGCTCGCTCCATTCGGGTCGGGTCGGAGGACTTGCCCCGGAAAGGCTCTTGCTTGGACAACTGTCATCTTCTGGGTGGCTACACTTTTACACGAGTTTAAATGGTTGCCTTCACCGAACCAAAACGACGCCGTCGACTTCTCTGAAGTTCTCAAGCTCTCTTGCGAGATGGCCAATCCACTCACCGTTAAACTATGCCCAAGGCGTAATTCAAGCTTTTAA | 1602 | 53.06 | MSLSTQIESLWVFALASKCSSLTKDTLLCSLLFLLLICFLLSIFHWAHPGGPAWGSHGYYRRTAAVIPGPRGLPLIGSMTLMMGLAHQRIAAIAKSLGATRLMAFSLAYTRVIVTSHPDVAKEILNSSVFADRPIKESAYSLMFNRAIGFAPYGLYWRTLRRIASHHLFSPKQIKSSESHRRHIASQMLAIFSSTTTSPHRVRDTLKRASLNSMMASVFGRFYTLTDSNNEAEQLQTLVAEGYDLLGLLNWSDHLPFLADFDPQRIRFRCSQLVPQVNRLVGRIIAEHRSNSTSDQITDFVDVLLSLQQSDNLSDSDIIAVLWEMIFRGTDTTAVLMEWILARMVVHTEVQEKVQSELDTVVGRSRAVVESDIPSLVYLTAVVKEVLRLHPPGPLLSWARLAITDTTIDGHHVPKGTTAMVNMWSIARDPQVWSDPLEFKPERFVSGGADVEFSVMGSDLRLAPFGSGRRTCPGKALAWTTVIFWVATLLHEFKWLPSPNQNDAVDFSEVLKLSCEMANPLTVKLCPRRNSSF | 533 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 3196541 | 3198542 | - | CmaCh17G005000.1 | Cma17g00500 | 312395 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00500 | 533 | PANTHER | CYTOCHROME P450 78A7-RELATED | 4 | 531 | - | - | |
Cma17g00500 | 533 | Gene3D | Cytochrome P450 | 60 | 532 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | SUPERFAMILY | Cytochrome P450 | 67 | 528 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | Pfam | Cytochrome P450 | 68 | 503 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 465 | 474 | IPR017972 | GO:0005506|GO:0016705 | |
Cma17g00500 | 533 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PRINTS | P450 superfamily signature | 381 | 392 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PRINTS | P450 superfamily signature | 463 | 472 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PRINTS | P450 superfamily signature | 472 | 483 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PRINTS | E-class P450 group I signature | 209 | 227 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PRINTS | E-class P450 group I signature | 380 | 398 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PRINTS | E-class P450 group I signature | 422 | 446 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PRINTS | E-class P450 group I signature | 462 | 472 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PRINTS | E-class P450 group I signature | 472 | 495 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cma17g00500 | 533 | PANTHER | CYTOCHROME P450 78A6 | 4 | 531 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00453 | Cma-Chr5:2082462 | Cma17g00500 | Cma-Chr17:3196541 | 7.51E-180 | dispersed | |
Cma17g00500 | Cma-Chr17:3196541 | Cma18g00699 | Cma-Chr18:6378834 | 5.74E-173 | dispersed | |
Cma20g01100 | Cma-Chr20:8558485 | Cma17g00500 | Cma-Chr17:3196541 | 7.65E-170 | transposed | |
Cma17g00500 | Cma-Chr17:3196541 | Cma08g00855 | Cma-Chr8:5210732 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00500 | K20619 | - | csv:101216159 | 838.18 |