Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00500 ATGTCGTTGAGTACCCAAATTGAAAGCCTTTGGGTCTTCGCGTTGGCTTCCAAATGCTCCTCTCTCACCAAAGACACCCTCCTTTGCTCACTCCTCTTTCTTCTTCTTATTTGCTTTCTCCTTTCCATTTTCCACTGGGCCCATCCTGGCGGCCCTGCTTGGGGCTCCCACGGATACTACCGCCGCACCGCCGCCGTCATCCCTGGCCCAAGAGGCCTCCCACTCATCGGGAGCATGACCTTGATGATGGGTCTGGCCCACCAGCGAATCGCCGCCATCGCCAAATCCCTAGGAGCTACCCGTCTCATGGCTTTCTCACTCGCCTACACTCGCGTCATTGTCACTTCTCATCCCGACGTCGCTAAAGAGATCCTTAACAGCTCCGTCTTTGCTGACCGTCCGATTAAGGAATCTGCTTACTCTTTGATGTTCAATCGCGCCATTGGTTTCGCCCCTTATGGGCTCTACTGGCGGACCCTCCGCCGTATCGCTTCCCACCATCTCTTCTCCCCTAAACAAATCAAATCCTCTGAGTCACACCGCCGCCATATCGCTTCCCAAATGCTCGCAATCTTCTCTTCCACCACCACCTCCCCCCACCGCGTCCGCGACACGCTCAAACGAGCCTCTTTAAATAGCATGATGGCCTCCGTCTTCGGCCGCTTTTATACCCTCACCGACTCCAATAACGAAGCCGAACAACTCCAAACCCTTGTTGCCGAAGGCTACGATTTATTGGGCCTTCTCAACTGGTCCGACCATCTCCCCTTCTTAGCCGATTTCGACCCACAGAGAATCCGGTTCAGATGCTCCCAATTGGTCCCCCAAGTGAACCGCCTCGTCGGCCGGATCATCGCTGAACACCGGTCCAATTCAACCTCCGATCAAATCACGGATTTCGTCGACGTTCTTCTCTCTCTTCAACAATCTGACAATCTCTCTGACTCCGACATCATAGCCGTTCTTTGGGAAATGATATTTAGGGGTACGGACACGACGGCGGTATTAATGGAATGGATTCTCGCCAGGATGGTTGTTCACACGGAGGTGCAAGAAAAGGTTCAATCGGAACTAGACACGGTGGTTGGGAGATCACGTGCCGTGGTGGAATCCGACATTCCGTCCCTGGTTTATCTAACCGCGGTGGTTAAAGAAGTTCTAAGGTTACACCCACCGGGCCCACTTTTATCCTGGGCTCGCTTAGCCATCACTGACACAACCATAGACGGTCACCACGTGCCTAAGGGCACCACTGCCATGGTTAACATGTGGTCGATAGCACGAGACCCACAGGTCTGGTCAGACCCACTTGAATTTAAACCCGAGAGGTTTGTGTCTGGTGGCGCTGACGTGGAGTTTTCAGTTATGGGTTCAGATCTACGGCTCGCTCCATTCGGGTCGGGTCGGAGGACTTGCCCCGGAAAGGCTCTTGCTTGGACAACTGTCATCTTCTGGGTGGCTACACTTTTACACGAGTTTAAATGGTTGCCTTCACCGAACCAAAACGACGCCGTCGACTTCTCTGAAGTTCTCAAGCTCTCTTGCGAGATGGCCAATCCACTCACCGTTAAACTATGCCCAAGGCGTAATTCAAGCTTTTAA 1602 53.06 MSLSTQIESLWVFALASKCSSLTKDTLLCSLLFLLLICFLLSIFHWAHPGGPAWGSHGYYRRTAAVIPGPRGLPLIGSMTLMMGLAHQRIAAIAKSLGATRLMAFSLAYTRVIVTSHPDVAKEILNSSVFADRPIKESAYSLMFNRAIGFAPYGLYWRTLRRIASHHLFSPKQIKSSESHRRHIASQMLAIFSSTTTSPHRVRDTLKRASLNSMMASVFGRFYTLTDSNNEAEQLQTLVAEGYDLLGLLNWSDHLPFLADFDPQRIRFRCSQLVPQVNRLVGRIIAEHRSNSTSDQITDFVDVLLSLQQSDNLSDSDIIAVLWEMIFRGTDTTAVLMEWILARMVVHTEVQEKVQSELDTVVGRSRAVVESDIPSLVYLTAVVKEVLRLHPPGPLLSWARLAITDTTIDGHHVPKGTTAMVNMWSIARDPQVWSDPLEFKPERFVSGGADVEFSVMGSDLRLAPFGSGRRTCPGKALAWTTVIFWVATLLHEFKWLPSPNQNDAVDFSEVLKLSCEMANPLTVKLCPRRNSSF 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3196541 3198542 - CmaCh17G005000.1 Cma17g00500 312395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00500 533 PANTHER CYTOCHROME P450 78A7-RELATED 4 531 - -
Cma17g00500 533 Gene3D Cytochrome P450 60 532 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 SUPERFAMILY Cytochrome P450 67 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 Pfam Cytochrome P450 68 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 465 474 IPR017972 GO:0005506|GO:0016705
Cma17g00500 533 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PRINTS P450 superfamily signature 463 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PRINTS P450 superfamily signature 472 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PRINTS E-class P450 group I signature 462 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PRINTS E-class P450 group I signature 472 495 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma17g00500 533 PANTHER CYTOCHROME P450 78A6 4 531 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00453 Cma-Chr5:2082462 Cma17g00500 Cma-Chr17:3196541 7.51E-180 dispersed
Cma17g00500 Cma-Chr17:3196541 Cma18g00699 Cma-Chr18:6378834 5.74E-173 dispersed
Cma20g01100 Cma-Chr20:8558485 Cma17g00500 Cma-Chr17:3196541 7.65E-170 transposed
Cma17g00500 Cma-Chr17:3196541 Cma08g00855 Cma-Chr8:5210732 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00500 K20619 - csv:101216159 838.18