Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00504 ATGGAGGAGCCAGTCGTTTCCCCCTCTTCCTCCTCTCTCCACCACCGCCTCCAATTCCTCCTCCACACACAGCCACTCCCCTGGGCCTACGCCATCTTCTGGCAGACCACCACCGACCACAATGGTGCTGTTTTCCTCTCATGGCGCGAAGGCCACTTCCAGCCCTCCCCTATGTCCACTTCCTCCTCCTCCCCTGAAGGCTCCCACAGCCCCCCTCTCCTCCCCGACGCCCCCCTCGACCTCGAGTGGTTCTACATGATGTCCTTAACCCAATCCTTCGCCCCCGCCGACGGCCTACCTGGAAGATCCTTCTGCTCCGGCGCGGCTGTCTGGCTCACCGGCCCGGACGAGCTCGAGCGGTACGACTGCCAAAGAGCCAAGGAGGCCAAATCCCACGGCATCCAAACCCTCCTCTGCGTCCCAATCCCTTACGGCGTCCTCGAACTCGCATCCCCACAGATAATCCCCGAGGATTGGGGCTTAGTCCAACAGGTGAAATCCGTGTTGGACTCTGACATATCCAATTTCACAAACAGCAGCAGCCCACTTCCGTTCTTGGACCAAGACATCAATTTGGAGGAGATTGGGTTCATGAGCGAAGCCCCAGAGGAGGAAGTGGGAAGGCCCGACAGAGGGAAATCGAGAAGAACAGAGTCCGCAGGGGAATTGGAGCTGTCGGATTCCGACAGCCCAGTGGGGAAAGCGGCGGGAAAAAGAAGAGGGAGGAAACGAGGTCGGAAGGAGAACGCGACGAACCACGTGGAAGCAGAACGGCAGAGGAGGGAGAAACTAAACAAGCGATTCTACGCGCTCCGGTCGGTAGTGCCGAACGTGTCGAGAATGGACAAGGCGTCGTTGCTGTGGGACGCAGTATCTTACATAAACGCACTAAAGGGGAAGGTGGAGGAGATGGAATTGGAGGTGAGGAAGTTGAAGAAAGGGGGAGGGGAGGGGGTGGAGAAACAGAGCACCACGACGTCGGAGGAGGAGGAACAAGGGAAGGGCAGCACTCTGTTCGACGTGGAGGTAAAAAGGATGGGAGGAGGGGACGCAATGGTGCGAGTTGAGTCCCATAATCAAAACTGCCCTTCCGCCACATTGATGGGGGCATTACGAGATCTGGAAGTTCACATTCACCACGCCAACATCACCAATGTAAACGATTTGATGCTCCAAGATGTTTTGATTAAGCTTCCCCATGGTTTCTCCACCGATGAAGCCTTCAAAGCAGCTCTTTTATCTAAATTACACTAA 1254 56.22 MEEPVVSPSSSSLHHRLQFLLHTQPLPWAYAIFWQTTTDHNGAVFLSWREGHFQPSPMSTSSSSPEGSHSPPLLPDAPLDLEWFYMMSLTQSFAPADGLPGRSFCSGAAVWLTGPDELERYDCQRAKEAKSHGIQTLLCVPIPYGVLELASPQIIPEDWGLVQQVKSVLDSDISNFTNSSSPLPFLDQDINLEEIGFMSEAPEEEVGRPDRGKSRRTESAGELELSDSDSPVGKAAGKRRGRKRGRKENATNHVEAERQRREKLNKRFYALRSVVPNVSRMDKASLLWDAVSYINALKGKVEEMELEVRKLKKGGGEGVEKQSTTTSEEEEQGKGSTLFDVEVKRMGGGDAMVRVESHNQNCPSATLMGALRDLEVHIHHANITNVNDLMLQDVLIKLPHGFSTDEAFKAALLSKLH 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3297860 3299113 - CmaCh17G005040.1 Cma17g00504 312399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00504 417 MobiDBLite consensus disorder prediction 312 335 - -
Cma17g00504 417 Gene3D - 241 314 IPR036638 GO:0046983
Cma17g00504 417 Coils Coil 247 267 - -
Cma17g00504 417 SMART finulus 254 303 IPR011598 GO:0046983
Cma17g00504 417 Coils Coil 294 314 - -
Cma17g00504 417 PANTHER MYC 7 417 IPR045084 GO:0003700|GO:0006355
Cma17g00504 417 Pfam Helix-loop-helix DNA-binding domain 251 297 IPR011598 GO:0046983
Cma17g00504 417 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 13 168 IPR025610 -
Cma17g00504 417 MobiDBLite consensus disorder prediction 198 260 - -
Cma17g00504 417 MobiDBLite consensus disorder prediction 201 223 - -
Cma17g00504 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 248 297 IPR011598 GO:0046983
Cma17g00504 417 PANTHER TRANSCRIPTION FACTOR BHLH14 7 417 - -
Cma17g00504 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 314 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g02113 Cma17g00504 CCT
Cma06g00648 Cma17g00504 CCT
Cma06g00648 Cma17g00504 ECH
Cma14g02113 Cma17g00504 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01302 Cma-Chr12:10044024 Cma17g00504 Cma-Chr17:3297860 2.34E-09 dispersed
Cma16g01232 Cma-Chr16:9341338 Cma17g00504 Cma-Chr17:3297860 7.18E-75 dispersed
Cma17g00504 Cma-Chr17:3297860 Cma19g00236 Cma-Chr19:1667766 5.68E-26 dispersed
Cma17g00504 Cma-Chr17:3297860 Cma06g00583 Cma-Chr6:2802550 3.11E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36653 PF14215 bHLH-MYC_N 4.10E-41 CL0161 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00504 - K13422 csv:101216876 506.523