Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00554 ATGGAATTTCTTACCAAATCAAACGCCTACTCGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAAGAAGATGATGAAATCCGGGGTGTTGCATGCGATTTCTTCCCAAATTCACGCACCCAAAACCAGGAATGGGTTCAACACCCTCCAATAAATCAACCCCAGGATCACCACCCTCTCATGGACTTATCCCTCAGGATGGAAACTAATGGGTTTGGCGTTGTGGAGAGAGAGCACATGTTCGACAAGGTTGTCACTCCAAGCGATGTCGGGAAATTAAACCGTTTGGTCATCCCCAAACAACACGCCGAGAAATACTTCCCTTTGGACTCTGCCACCTACGACAAGGGCCTCATCTTGAACTTCGAGGACCCTAATGGAAAGCCCTGGCGCTTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTGATGACCAAAGGCTGGAGCCGTTTTGTCAAGGAAAAAAAGCTTGATGCAGGCGACGTCGTTTCCTTCCACCGTGGTGTTGGCGATTCCGCTAGGGATCGCCTTTTCATCGACTGGCGCCGCCGTCCTAACGCCCTGACTCCTCCTCCTCACCACCACTTCTCCAACCCTCCTCTCCTCTTCCTCCCACAATCCCTCCGTTGGGCCACCGCCCGCCACTTGCCTCCACCGGCGCATCCGCCGCCTCACCACCGCCTCTATTCCAATTACGCCTTCGAAATCCCTAATTTGGGTATTCCTCATAACAACAATTCTTCCATGTATTATTTTAGACCCACCTCCATGTCCTCTTCTTCGGAAATTGTTGTTCATAGTGAAGGGTCTTCCATGGGGATTAAGAAACCCACCTCCGGTGCTGCGAAACGGCTGAGACTCTTCGGAGTCAATATGGAGTGTGCTACAGAGGATGGAGGAGAAGAAGATCTGTCAAACGGCAGCGTTTCAAGGAGAGGGAAACAGCCCTTCTCGTTGAATTGGGATTTGGTTTGA 975 51.08 MEFLTKSNAYSEEEEEEEEEEEDDEIRGVACDFFPNSRTQNQEWVQHPPINQPQDHHPLMDLSLRMETNGFGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSATYDKGLILNFEDPNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFHRGVGDSARDRLFIDWRRRPNALTPPPHHHFSNPPLLFLPQSLRWATARHLPPPAHPPPHHRLYSNYAFEIPNLGIPHNNNSSMYYFRPTSMSSSSEIVVHSEGSSMGIKKPTSGAAKRLRLFGVNMECATEDGGEEDLSNGSVSRRGKQPFSLNWDLV 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4493889 4494863 + CmaCh17G005540.1 Cma17g00554 312449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00554 324 SMART B3_2 80 185 IPR003340 GO:0003677
Cma17g00554 324 Coils Coil 1 21 - -
Cma17g00554 324 ProSiteProfiles B3 DNA-binding domain profile. 80 185 IPR003340 GO:0003677
Cma17g00554 324 MobiDBLite consensus disorder prediction 1 26 - -
Cma17g00554 324 MobiDBLite consensus disorder prediction 11 26 - -
Cma17g00554 324 CDD B3_DNA 78 167 IPR003340 GO:0003677
Cma17g00554 324 Gene3D - 73 196 IPR015300 -
Cma17g00554 324 Pfam B3 DNA binding domain 80 184 IPR003340 GO:0003677
Cma17g00554 324 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 22 303 - -
Cma17g00554 324 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 303 IPR044800 GO:0003700
Cma17g00554 324 SUPERFAMILY DNA-binding pseudobarrel domain 77 171 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00001 Cma-Chr8:7522 Cma17g00554 Cma-Chr17:4493889 5.83E-131 dispersed
Cma16g00597 Cma-Chr16:3085688 Cma17g00554 Cma-Chr17:4493889 8.05E-64 dispersed
Cma17g00554 Cma-Chr17:4493889 Cma18g01042 Cma-Chr18:8666735 3.43E-46 dispersed
Cma17g00554 Cma-Chr17:4493889 Cma15g01340 Cma-Chr15:8405825 4.31E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36658 PF02362 B3 1.10E-28 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00554 - - cmos:111436350 619.002