Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00559 ATGGAGCTGGATGGCATCGAGGGCGTGCCATCCATGGATGTGATGGACGAGGAGGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCCATTTCTAAGCCTCGGATCAACAATAACGACAATCCCACCACCACAAGTGTTCACGAGCTTCTTGAATGTCCCGTCTGCACCAATTCTATGTATCCCCCAATTCATCAGTGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGTCCGACATGCAGACAAGAGCTCGGCGATATCAGGTGTCTAGCATTAGAGAAAATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTCGGGTGCCCGGAGATATTGCCATACTACAGCAAACTCAAACACGAGTCTGCCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGTGATGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTCGAAAATGCTACATGGATGCTAACTGTGTTTCACTGTTTTGGGCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCGGTTTACATGGCGTTTCTCCGATTCATGGGGGACGAAACGGATGCTCGAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGCTGATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCCTCATTATACAACGAAACATGGCGCTCTTCTTTTCGGGTGGAGAAAGGAAAGAGCTGAAGCTGCGGATCACAGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 46.99 MELDGIEGVPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4545506 4547723 + CmaCh17G005590.1 Cma17g00559 312454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00559 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 96 IPR013083 -
Cma17g00559 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 302 - -
Cma17g00559 304 CDD Sina 167 295 - -
Cma17g00559 304 CDD RING-HC_SIAHs 51 89 - -
Cma17g00559 304 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cma17g00559 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 160 IPR013083 -
Cma17g00559 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Cma17g00559 304 SUPERFAMILY TRAF domain-like 106 298 - -
Cma17g00559 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT3 1 302 - -
Cma17g00559 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Cma17g00559 304 SUPERFAMILY RING/U-box 47 93 - -
Cma17g00559 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00047 Cma-Chr16:199743 Cma17g00559 Cma-Chr17:4545506 2.67E-149 dispersed
Cma17g00559 Cma-Chr17:4545506 Cma18g01332 Cma-Chr18:10151205 9.58E-163 dispersed
Cma17g00559 Cma-Chr17:4545506 Cma08g00110 Cma-Chr8:583263 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00559 K04506 - csv:101209363 644.039