Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00559 | ATGGAGCTGGATGGCATCGAGGGCGTGCCATCCATGGATGTGATGGACGAGGAGGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCCATTTCTAAGCCTCGGATCAACAATAACGACAATCCCACCACCACAAGTGTTCACGAGCTTCTTGAATGTCCCGTCTGCACCAATTCTATGTATCCCCCAATTCATCAGTGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGTCCGACATGCAGACAAGAGCTCGGCGATATCAGGTGTCTAGCATTAGAGAAAATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTCGGGTGCCCGGAGATATTGCCATACTACAGCAAACTCAAACACGAGTCTGCCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGTGATGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTCGAAAATGCTACATGGATGCTAACTGTGTTTCACTGTTTTGGGCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCGGTTTACATGGCGTTTCTCCGATTCATGGGGGACGAAACGGATGCTCGAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGCTGATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCCTCATTATACAACGAAACATGGCGCTCTTCTTTTCGGGTGGAGAAAGGAAAGAGCTGAAGCTGCGGATCACAGGACGGATTTGGAAAGAACAAAATAAACAGTAA | 915 | 46.99 | MELDGIEGVPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 4545506 | 4547723 | + | CmaCh17G005590.1 | Cma17g00559 | 312454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00559 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 96 | IPR013083 | - | |
Cma17g00559 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 302 | - | - | |
Cma17g00559 | 304 | CDD | Sina | 167 | 295 | - | - | |
Cma17g00559 | 304 | CDD | RING-HC_SIAHs | 51 | 89 | - | - | |
Cma17g00559 | 304 | Pfam | Seven in absentia protein family | 95 | 294 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cma17g00559 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 160 | IPR013083 | - | |
Cma17g00559 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 53 | 89 | IPR001841 | - | |
Cma17g00559 | 304 | SUPERFAMILY | TRAF domain-like | 106 | 298 | - | - | |
Cma17g00559 | 304 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT3 | 1 | 302 | - | - | |
Cma17g00559 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 106 | 166 | IPR013010 | GO:0008270 | |
Cma17g00559 | 304 | SUPERFAMILY | RING/U-box | 47 | 93 | - | - | |
Cma17g00559 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 161 | 294 | IPR008974 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g00047 | Cma-Chr16:199743 | Cma17g00559 | Cma-Chr17:4545506 | 2.67E-149 | dispersed | |
Cma17g00559 | Cma-Chr17:4545506 | Cma18g01332 | Cma-Chr18:10151205 | 9.58E-163 | dispersed | |
Cma17g00559 | Cma-Chr17:4545506 | Cma08g00110 | Cma-Chr8:583263 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00559 | K04506 | - | csv:101209363 | 644.039 |