Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00564 ATGTTCGCACATTTCATTCTTCCGCACAGACCTTACTTTTCTGTTAAATCTGAATTTTGGGGTAAGAATTTGGATTTTCGAAACAGAAATGATAGTTTGAGTGATAATTCAAGAAAATATCATGTGTATTTTCAACCGATTAGAGCTGGTGTGAAATGGAGGAAGGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAATTGGTTACTCGGATTAGGAAGATTCTAGTTCAACATCATGATAATGTTATGTCACTTAGGGGTTTGGGTAAATTCAGGAGAGATTTAGGTGTACAGGAAAAGACGAGGCTAATTGAGTTGTTGAAGATGTTCCCTGCAGTATTTGAGATTGTAGAAGAAGAAGCGTTTTCTTTGAAATTTAAATTGACGGAAGAGGCTGAAAGGTTGTACTTCGAGGAGATGAAGATCAGAAATGAAATGGAAGGTTTGTTGGTTACTAAGCTGAGGAAGTTACTGATGATGTCTGCTGATAAGCGAATATTGTTGGAGAAAATTGCACATTTGAGGACTGATTTTGGTCTTCCTTCCGAGTTTCGTGACACGATTTGCCATCGTTATCCTCAATACTTTAGAGTTGTGGCGACCGAGAGTGGTCCAGCTCTCGAATTGACACACTGGGATCCTGAACTTGCTGTTTCTGCAGCAGAGTTAGCCGATGAGGAGAACCAAGCTAGAGAACTGGAAGAGAAGAATTTGATTATTGACCGACCGTTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAAGCTTTCGAAGAATGAGATGAGGAAAATGAATGAGTTTAGGGACATTCCTTATATCTCTCCGTATTCTGATTTCTCAGGGATTACGGCAGGTACTCCCCAGAAAGAGAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACACTTGAGAAGAGAACTCTTGTTGATCATTTCACTCATTTCCGGGAGGAGTTTAGATTCTCCCAGCAGTTGAGGGGGATGCTAATAAGGCATCCCAATATGTTTTATGTCTCGTTGAAAGGGGATAAAAACTCAGTTTTCCTCAGAGAAGCATATCGCGATTCTCAGTTGATCGACAAAGATCGGTTGTTAATCGTAAAGGAGAAGTTTCGAGGTCTTGTGGCTGTTCCTCAATTAAAAGGCAGAGGAGCTCCCAAAAGTGACACGGATTGGCGAGAAACCAATCATGGAGATGATATGAGAGGTGAAGAATGGTCTGATGTCGACGATGACGATGATGAATTCGACAACGATGGTGAGGATGACTGGATTGATGAACAGATCAATAACTTGGACATGGCTGATCAGAGGCTTCTTTCTCCTCCTGCATTACCCGATGGACGGCCCCAAGAAAGATGGTGA 1386 41.49 MFAHFILPHRPYFSVKSEFWGKNLDFRNRNDSLSDNSRKYHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKFKLTEEAERLYFEEMKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSAAELADEENQARELEEKNLIIDRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGITAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIVKEKFRGLVAVPQLKGRGAPKSDTDWRETNHGDDMRGEEWSDVDDDDDEFDNDGEDDWIDEQINNLDMADQRLLSPPALPDGRPQERW 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4602049 4605337 + CmaCh17G005640.1 Cma17g00564 312459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00564 461 MobiDBLite consensus disorder prediction 393 411 - -
Cma17g00564 461 MobiDBLite consensus disorder prediction 389 461 - -
Cma17g00564 461 Coils Coil 220 240 - -
Cma17g00564 461 MobiDBLite consensus disorder prediction 412 436 - -
Cma17g00564 461 Pfam Plant organelle RNA recognition domain 55 383 IPR021099 GO:0003723
Cma17g00564 461 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 18 435 IPR045040 GO:0003723
Cma17g00564 461 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 18 435 IPR040293 GO:0000373|GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00564 - - - cmax:111488626 911.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00559 Cma-Chr9:2540880 Cma17g00564 Cma-Chr17:4602049 1.60E-55 dispersed
Cma14g01484 Cma-Chr14:11272602 Cma17g00564 Cma-Chr17:4602049 2.60E-69 dispersed
Cma15g01409 Cma-Chr15:8890750 Cma17g00564 Cma-Chr17:4602049 5.02E-38 dispersed
Cma17g00564 Cma-Chr17:4602049 Cma17g01163 Cma-Chr17:8081310 4.02E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1082 . . . . . . . . . Cmo17g00545 . . . . . . . Bhi01g02663 . . . Hepe05g1249 . . . . . . . . . . . . . . . . . Blo02g00417 . . Bda13g00292 . . Bma02g00998 . . . . . Cma17g00564 . Car17g00518 Cpe12g00478 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010663 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00564 Cma_Chr17 FPKM 3.976309 3.937904 7.342821 7.729707 18.905563 17.281704 19.788435 12.18463 12.682439 13.067079