Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00570 ATGGCATTGTCTTCTTCTCCGGCGAGACCTCCAATTATCCCTCTCTTCTCACTCCTTTTTCTCCTTTTTCTCTTCCGCATCTCGTCTGTCTTCGCGGGCGATGTCTCACTCGATGACGACTCCGCTCCCAAGTCCGGAAATTGCAACAATCCCTTTGATTTGGTCAAAGTTAAGAGCTGGGTTAATGATGCTGAAGATAAAATCTTTGTTGGTCTAAGTGCAAGATTTGGGGCTTTGGTGCCTTCTCAGGCTGAAAATGCTCCCAAATTGCCAGTTGTTGATATGAATCCTATAAATGGATGTTCTAGTTCTTCTTCAAAGCTATCTGGAGCAATTGCCTTGTCTATACGTGGTGAATGCGACTTCACAAATAAGGCAGTAGTTGCACAGGCAGGGGGCGCTGCAGCCCTGTTGATAATAAATGACAAAGAAGATCTTTACAAGATGGTCTGCCCTGAAAAAGACATCGCTCTCAATATTTCAATTCCTGTTGTGATGCTTCCCAAGTCCAGTGGAGATGCTCTTACCAAATTAATAACTGACGGAAAGAGAGTGGAACTTCTATTATATGCGCCAAAGCGTCCAATTGTGGACTTCTCTGTTGTGTTTTTGTGGATGATGGCTGTTGGAACAGTTGCATGTGCTGCACTTTGGCCTGAGATCACTGCCGAGCAGACTGAGGAGCGCTATAATGAATTATCAGCGAAGGAATCTTCCAGTCGTGAAGCAGCCAAAGATGACTTTGATGATGAAACACTCGATATTAATGCAAAGAGTGCAGTAGTATTTGTCATTACAGCATCTAGTTTCTTGGTGCTGCTATATTTCTTTATGTCTTCTTGGTTCGTTTGGCTGTTGATTGTTATGTTCTGCATTGGTGGTGTTGAGGGTATGCATTCCTGTATATTAGGACTGTTATTAAGAAAAGGCAAAAGTTGTGGGCAGAAGACTCTGAATTTGCCTTTAGTAGGGGAGATCTCTGTGCTTTCACTTGTTGTGCTGCTTTGTTCCATAACTTTTGCAGTCGTTTGGGCTCTGAATCGGCGTGCATCATATTCTTGGGTTGGTCAAAATGTTCTTGGTATTTGCCTGATGATAACAGTCCTGCAGATGGCCCGATTACCTAATATCAAGGTAGCAACAGTGCTTCTTTGCTGTGCATTTGTCTATGACATCTTCTGGGTGTTCATATCACCAGTAATTTTCCATGAGAGTGTAATGATTGCGGTTGCCCGAGGGGACAATAGTGGTGGAGAATCCATTCCAATGCTTTTAAGGGTTCCTCGCACCTTTGATCCTTGGGGTGGTTTCGATATGATTGGATTTGGGGATATACTCTTCCCTGGGTTGCTTGTTTCGTTTACTCACAGATTTGACAAAGCACTCAACAAAAGCAGGTGTAATGCGTATTTTCCTTGGTTGGTTGTTGGTTACGGAACCGGTCTGGTGTTAACGTATTTGGGGTTATATTTTATGAATGGACATGGTCAACCTGCACTCCTTTATCTTGTTCCATGCACCTTAGGTGTTACTGTTGTTTTGGGTTTTATGAGAGGGGAGATTAAGCAACTTTGGAATTATGGGACAGAAAATTCCTTGGATAGGGAACCTCCTTCTGGAGAAGCTTGA 1629 43.22 MALSSSPARPPIIPLFSLLFLLFLFRISSVFAGDVSLDDDSAPKSGNCNNPFDLVKVKSWVNDAEDKIFVGLSARFGALVPSQAENAPKLPVVDMNPINGCSSSSSKLSGAIALSIRGECDFTNKAVVAQAGGAAALLIINDKEDLYKMVCPEKDIALNISIPVVMLPKSSGDALTKLITDGKRVELLLYAPKRPIVDFSVVFLWMMAVGTVACAALWPEITAEQTEERYNELSAKESSSREAAKDDFDDETLDINAKSAVVFVITASSFLVLLYFFMSSWFVWLLIVMFCIGGVEGMHSCILGLLLRKGKSCGQKTLNLPLVGEISVLSLVVLLCSITFAVVWALNRRASYSWVGQNVLGICLMITVLQMARLPNIKVATVLLCCAFVYDIFWVFISPVIFHESVMIAVARGDNSGGESIPMLLRVPRTFDPWGGFDMIGFGDILFPGLLVSFTHRFDKALNKSRCNAYFPWLVVGYGTGLVLTYLGLYFMNGHGQPALLYLVPCTLGVTVVLGFMRGEIKQLWNYGTENSLDREPPSGEA 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4659953 4688185 + CmaCh17G005700.1 Cma17g00570 312465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00570 542 SMART psh_8 251 518 IPR006639 GO:0004190|GO:0016021
Cma17g00570 542 PANTHER SIGNAL PEPTIDE PEPTIDASE 43 537 IPR007369 GO:0004190|GO:0016021
Cma17g00570 542 SUPERFAMILY PA domain 89 150 IPR046450 -
Cma17g00570 542 Pfam PA domain 91 175 IPR003137 -
Cma17g00570 542 Coils Coil 223 243 - -
Cma17g00570 542 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE PROTEIN 43 537 - -
Cma17g00570 542 Gene3D - 56 192 - -
Cma17g00570 542 Pfam Signal peptide peptidase 250 529 IPR007369 GO:0004190|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00570 K09597 SPPL2B; signal peptide peptidase-like 2B [EC:3.4.23.-] - csv:101207965 896.345
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g00905 Cma17g00570 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00435 Cma-Chr17:2574258 Cma17g00570 Cma-Chr17:4659953 3.55E-154 dispersed
Cma17g00570 Cma-Chr17:4659953 Cma18g01252 Cma-Chr18:9766061 6.68E-26 dispersed
Cma17g00570 Cma-Chr17:4659953 Cma08g00099 Cma-Chr8:525622 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1100 . . . . . . . . Cmo08g00877 Cmo17g00554 . . . . . . . . . . . . . . Cla08g00393 Cam08g0814 Cec08g0389 Cco08g0484 Clacu08g0523 . Cre08g0354 . . . Cone11ag0637 . . . . Blo02g00439 Blo07g00107 . Bda13g00263 . Bpe13g00727 Bma02g00979 Bma06g01433 . . . Cma08g00905 Cma17g00570 . Car17g00525 Cpe12g00484 . . . . . . . . . . . . . . . Lsi09g01570 . . Cme11g02164
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003023 1 2 2 2 0 2 2 2 2 1 2 1 2 1 1 3 2 1 2 2 1 1 1 1 1 3 1 3 4 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00570 Cma_Chr17 FPKM 32.602543 32.509224 43.299599 41.181046 24.560966 25.900229 28.823387 40.264702 38.856354 50.504353