Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00581 ATGGATGCTCCTCGCTTGTCTTTGGCTCCAACCCAGTTCATGAAAAGCGATGACATCAATTCTTCATCCAACAAATTACAACAAACAAACTCCTCATGTTCTAGGAAGAGGAAGCTTCTTCTCCATCATCATCACCCTTATCCTCATCATATCAACTCTCAAACAAGTGTTGATCTTCAACTCAAAGACCCTCTCCCTCTTGATTGGGAGCAATGTCTCGATCTTCAGTCAGGGAAAATGTACTATTTAAACAGGAAGACGTTGAGGAAGAGTTGGAATTGGCCAAAAGAGGATCACCATAATGATGATAAGAAGCTAGACTTGGAGTTGGAGCTCAACAACATTGATTCTTCATCATCCAAAGCTAATAGTTTGATGAATTTCAGACATGGGTATGGAAGTTCTTCTTCACAAAGCAGCAATATGGTGGCTTTGCCTTGTCTCAATTGCCACCTTCTTGTTATTCTCTCAAAATCATCCCCTTCTTGTCCTAATTGCAAGCATTTTCATACCCTTTTTCCTATCCCTTCTTCACCCAACTCTCCTCCCAACACCTTGTCCCTCTTGAACTAG 573 41.36 MDAPRLSLAPTQFMKSDDINSSSNKLQQTNSSCSRKRKLLLHHHHPYPHHINSQTSVDLQLKDPLPLDWEQCLDLQSGKMYYLNRKTLRKSWNWPKEDHHNDDKKLDLELELNNIDSSSSKANSLMNFRHGYGSSSSQSSNMVALPCLNCHLLVILSKSSPSCPNCKHFHTLFPIPSSPNSPPNTLSLLN 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4814173 4815082 + CmaCh17G005810.1 Cma17g00581 312476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00581 190 SUPERFAMILY WW domain 63 97 IPR036020 GO:0005515
Cma17g00581 190 Gene3D - 60 109 - -
Cma17g00581 190 ProSiteProfiles WW/rsp5/WWP domain profile. 63 97 IPR001202 GO:0005515
Cma17g00581 190 PANTHER BOMB/KIRA PROTEINS 1 190 - -
Cma17g00581 190 PANTHER - 1 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00581 - - - csv:105435750 227.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00581 Cma-Chr17:4814173 Cma17g01411 Cma-Chr17:9333172 2.01E-06 dispersed
Cma17g00581 Cma-Chr17:4814173 Cma12g00155 Cma-Chr12:679891 6.06E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1126 . . . . . . . . . Cmo17g00565 . . . . . . . . . . . . . . Cla08g00418 Cam08g0856 Cec08g0432 Cco08g0542 Clacu08g0568 . Cre08g0392 . . . . . . . . . . . . . . . . . . . . Cma17g00581 . Car17g00539 Cpe12g00495 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012525 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00581 Cma_Chr17 FPKM 0.0 0.0 0.353698 0.582449 6.672002 7.736133 6.779308 0.0 0.0 0.0