Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00587 ATGCTCATTCACATTCAAACGCCGGTAATCACTCGTGTTCGTATTGCCAACTCTTCTCAACCCTCGATTTCCACGCCGCATCTGTTGTTGCTTACCGAATTCTATTCTGTTCCTTCTTTCCCAGTACTTCAAATTGTTAGATTCCGAATGAAAACTGCATCGATTGTTCTTCAGTTGGGTCTCGTCGAAACGACGATAATGAGGAGTTTCAAGGATTTTTGCACGAAGAAGACTCTAATCGGTCTTGGGTTGGGACAATTTTTGTCTCTTCTTATCACTTCCACTGGATTTGCATCCTCTGAACTCGCTAAAAGAGGAATTAATGCACCAACATCACAGTCCTTTATAAACTACGTCCTTTTGGCTATTGTCTATGGAAGTATAGTGCTCTATCGTAGAAAGGCACTCAAGGCAAAATGGTACTTCTACATACCTTTAGGATTGGTAGATGTAGAAGCCAACTACCTTGTTGTGAAGGCATATCAATACACATCTTTAACAAGCGTGATGCTGCTGGATTGTTGGACAATCCCTTGTGTGATGCTGCTCACCTGGATTTTCCTAAAAACAAAATACAGATTCAGGAAGATAGGCGGTGTTGTCGTGTGTGTTGCTGGCCTCGTCATGGTTATCTTTTCTGATGTTCATGCTGGCGACCGAGCTGGAGGAAGCAGCCCACTTAAAGGGGATGCTCTTGTTATAGCTGGTGCTACCCTTTATGCTGTTACCAATGTCAGCGAGGAATTTCTGGTGAAGAATGCTGACAGAGTTGAGCTAATGGCTATGTTAGGTAGCTTCGGTGCCATCATCAGTGCTATCCAAATAAGCATAATCGAGCGCAAGGAGTTACGATCCATTCGATGGACTGCAGAAGCAGCCATTCCTTTTGCTGGATTCTCTGCGGCTATGTTTTTTTTCTACTCGCTCGTCCCTGTATTACTTCAGATCAGTGGATCCACAATGTTGAACCTGTCCTTGCTCACCTCGGACATGTGGTCCGTTGTGATTCGTGTCGTCGCGTATCATGAGAAGGTTGATTGGCTTTACTATTTGGCCTTTGCTGCTGTTATCATTGGACTCATTACTTATTCAGTGGGTGAGAGAGAAGAAGGAGAAGATCGACGTCGAACTAACATTGATGAAGAAGCCGAGCATGATAAACGTCCATACAAGGAATGTCCACCGGAAAAACGGGTACTAGGAATAGCAGGCAGCAGTTAG 1221 44.23 MLIHIQTPVITRVRIANSSQPSISTPHLLLLTEFYSVPSFPVLQIVRFRMKTASIVLQLGLVETTIMRSFKDFCTKKTLIGLGLGQFLSLLITSTGFASSELAKRGINAPTSQSFINYVLLAIVYGSIVLYRRKALKAKWYFYIPLGLVDVEANYLVVKAYQYTSLTSVMLLDCWTIPCVMLLTWIFLKTKYRFRKIGGVVVCVAGLVMVIFSDVHAGDRAGGSSPLKGDALVIAGATLYAVTNVSEEFLVKNADRVELMAMLGSFGAIISAIQISIIERKELRSIRWTAEAAIPFAGFSAAMFFFYSLVPVLLQISGSTMLNLSLLTSDMWSVVIRVVAYHEKVDWLYYLAFAAVIIGLITYSVGEREEGEDRRRTNIDEEAEHDKRPYKECPPEKRVLGIAGSS 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4844916 4848657 - CmaCh17G005870.1 Cma17g00587 312482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00587 406 PANTHER DUF914-RELATED 70 374 - -
Cma17g00587 406 Pfam Solute carrier family 35 75 365 IPR009262 GO:0016021|GO:0022857|GO:0055085
Cma17g00587 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 124 215 - -
Cma17g00587 406 MobiDBLite consensus disorder prediction 371 393 - -
Cma17g00587 406 PANTHER OS09G0513200 PROTEIN 70 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00587 K15287 SLC35F1_2; solute carrier family 35, member F1/2 - csv:101220907 588.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01492 Cma-Chr14:11307834 Cma17g00587 Cma-Chr17:4844916 2.23E-164 dispersed
Cma17g00587 Cma-Chr17:4844916 Cma08g00085 Cma-Chr8:450190 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1135 . . . . . . . . . Cmo17g00569 . . . . . . . Bhi01g02640 . . . . . . Cla08g00439 Cam08g0872 Cec08g0450 Cco08g0573 Clacu08g0588 . Cre08g0411 . . . . . . . Cme07g01858 . . . . . . . . . . . . Cma17g00587 . Car17g00543 Cpe12g00499 . . . . . . . . Cla07g01579 Cam07g1676 Cec07g1771 Cco07g1734 Clacu07g1660 Cmu07g1626 Cre07g2000 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001794 1 5 2 2 2 2 3 2 2 1 2 2 3 2 2 3 2 5 3 2 1 1 2 1 2 1 2 2 4 5 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00587 Cma_Chr17 FPKM 6.073624 6.09509 8.88914 9.202303 4.329033 4.445566 4.016438 9.035086 9.910369 11.139297