Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma17g00588 | ATGAGCAGAAGGGGGTTTAAATCCCTCCACTTTCTCTCACTCTCCTTAATTTCATCCCCAAGTAGATCCAACCCCATCTTCTCCTTTCACCCATTTCCGGTATACTCTGATTCTTTCAGAGCTGCCCTCGCTAACATCACTCTATATCGCCCAACGCTTTCCTCCTCCATTGCCCACTTCTCCACTTCTCCGGACGATCTGCAAGGATTGGTTGATCCGGACGAGTCGTTTCCGTCTGAGAGTTCGCGTGTCGAATGCTTTTCGGCCCCAGAAGTCTCTTTGCTGCGTGATTCTTTATTGGATTCTCATGCCGACTCGCCTTCTTCAGAGCCGACGCTCAAGTCTGGTAAGATTTCAAACGATGCCATTTCGATTTTAGATACAATTTGTAATAGTGATGATGGGTTCGGGGACAAAACCCAAAAATTACTTAGGCAGTTTAGGCAGAATTTGAATCCGGATTTGGTGGTTGAGATTTTGGGTCTTTTGAGAAATCCTGAATTGTGTGTCAAATTCTTTTTATGGGCTGGTCGACAAATTGGTTACAATCATACTGCGTCAGTGTACAATGCGTTGTTAGATGTTTGTGAATGTGGTAGCTATGATCGAGTACCCGAGAAGTTTCTTCGAGAAATTAAGGATGATGACAAAGAGGTGCTTGGGAAGTTGCTTAATGTGTTGATTAGGAAGTGTTGTCGAAATGGGTTTTGGAATGTAGCATTGGAAGAGCTCGGGAGGCTTAAGGACTTTGGATACAAGCCTACCCGGTTAACTTATAATGCTTTAATTCAAGTCTTTCTTAGAGCAGATAAGTTGGACACTGCTTATTTGGTTCATAGAGAAATGTCAGAGTTAGGATTCAATATGGATGAGTTTACTCTTGGTCTTTTTGCTCAAGCTCTCTGCAAAGTGGGCAAATGGAGAGAGGCCCTCTCGTTAATTGAGAAAGAAGATTTTGTCCCTAATACGATTCTTTATACGAAGATGATATCTGGACTGTGCGATGCTTCGTTTTTTGAAGAAGCTATGGATTTTTTGAACAGGATGCGGTCGAGTTCTTGCATCCCTAATGCTCGGACTTATAAGATCTTGCTTTGTGGCTGTTTGAATAAAAAACAGTTGGGTCGATGTAAGAGAATTCTAAGCATGATGATTGCAGAAGGCTGTTTCCCGAGTTATACGATATTTAATTCTCTTGTTCATGCTTATTGCAAAACAGGCGATTTTTCGTATGCTTATAAGTTGCTTAAGAAAATGGAAAAATGTGAATGCAAACCTGGCTATGTGGTTTACAATATCTTAATTGGCGGTATCTGTAATGGTAAAGAATTACCTGGGCCAATTACATTTGAGTTGGCTGAGAAAGCGTACAACGAGATGTGTTCTTCCGGAACTGTTCTAAATAAAGTCAATGTTGTAAGCTTTGCTCGATGCCTTTGCGGCTTTGGGAAATTTGAGAAAGCATATAAAGTAATCCATGAAATGATGGGTAATGGTTTCATTCCTGATACATCTACATATTCTGAAGTGATAGGTTTTATGTGCAATGCCTCAAGGGTAGAAAATGCCTTTTTGCTATTTAAAGAAATGAAAGGGGCTGGTATGGTTCCTGATGTTTATACATACACAATTTTAATTGATTGTTTTTCGAAAGCTGGCCTCATTCAACAAGCTCACAATTGGCTAGACGAAATGGTAAGAGATGGCTGTGAACCTACTGTGGTGACTTATACAACCCTCATCCATGCATATCTTAAGGCTAAGAAGGTTTCGGTCGCTAATGAACTTTTTGAGGTAATGATAGCCAAGGGTTGTATTCCTAATGTTATTACATATACAGCTTTAATTGATGGGTATAGTAAATCAGGGAATATAGAAAACGCTTGCCAGATTTATGCAAGAATGAGAGGTGATGCAGACATTCCCGATGTCGATATGTATTTTAAAACAGAAAATAACGTGTCTGAAAAGCCTAATGTTGTTACGTATGGAGCTTTGGTGGATGGTTTATGCAAGGCCCATAAAGTCAAAGATGCGTGTGACTTATTGGAAACGATGTTTTCGGAAGGCTGTGAACCAAACAACATTGTATATGATGCACTTATTGACGGCTTTTGTAAGGCTGCAAAGTTGGATGAAGCACAAGAGGTGTTTGTTAAGATGGTAGAGCGTGGGTATAACCCTAATGTCTATACTTATAGCTCTCTTATCGATAGATTGTTCAAGGATAAGCGTCTAGATCTTGTATTGAAAGTGTTGTCCAAAATGTTAGAGAATTCTTGTGCTCCTAATGTTGTTATCTATACAGAGATGATTGATGGACTTTGTAAAGTGGCAAAGACAGATGAAGCTTATAAACTTATGTTGATGATGGAAGAGAAGGGATGTAAACCAAATGTTGTGACCTACACTGCAATGATTGATGGCTTTGGGAAAGCTGGTAAAGTTGACAAATGCCTCGAGCTTTTCAGGGAAATGGGCTCGAAAGGCTGTTCTCCAAATTTTGTCACCTACACCGTGTTGATCAACCATTGCTGTGCTTCTGGCTGTTTAGATGAGGCCTATGCACTTTTGGATGAAATGAAACAAACATACTGGCCGAAACATGTATCGAGCTACTGTAAGGTTGTTGAAGGCTATAACCGGGAGTTCATTCTCTCTCTCGGGATCTTAGAGGAAGTGGAAAAGAATGATGCTACCCCAATTATTCTGCTGTACAGGGTTTTGATTGATAACTTTGTTAAGGCAGGAAGACTGGAAGTGGCACTGGAGCTCCACAAAGAGGTTATATCAGCTTCAATGTCTATGGCTGCTAAGAAAAATATGTACACAACTTTGATTTACAGCTTTTCTAAGGCAATGAAGATTGATCAGGCATTCGAGTTATATAATGATATGATAAGACAGGGTGTTATTCCAGATCTTGGTACATTTGTCCATCTTATTATGGGGCTCGTCAAAGTTAGCAGGTGGGAAGAAGCACTCCAGTTGTCAGATAGCATATGTCAAATGGATATCAATTGGTTGCAACGAGAAGACGCACCTTGA | 3048 | 40.26 | MSRRGFKSLHFLSLSLISSPSRSNPIFSFHPFPVYSDSFRAALANITLYRPTLSSSIAHFSTSPDDLQGLVDPDESFPSESSRVECFSAPEVSLLRDSLLDSHADSPSSEPTLKSGKISNDAISILDTICNSDDGFGDKTQKLLRQFRQNLNPDLVVEILGLLRNPELCVKFFLWAGRQIGYNHTASVYNALLDVCECGSYDRVPEKFLREIKDDDKEVLGKLLNVLIRKCCRNGFWNVALEELGRLKDFGYKPTRLTYNALIQVFLRADKLDTAYLVHREMSELGFNMDEFTLGLFAQALCKVGKWREALSLIEKEDFVPNTILYTKMISGLCDASFFEEAMDFLNRMRSSSCIPNARTYKILLCGCLNKKQLGRCKRILSMMIAEGCFPSYTIFNSLVHAYCKTGDFSYAYKLLKKMEKCECKPGYVVYNILIGGICNGKELPGPITFELAEKAYNEMCSSGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFIPDTSTYSEVIGFMCNASRVENAFLLFKEMKGAGMVPDVYTYTILIDCFSKAGLIQQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFEVMIAKGCIPNVITYTALIDGYSKSGNIENACQIYARMRGDADIPDVDMYFKTENNVSEKPNVVTYGALVDGLCKAHKVKDACDLLETMFSEGCEPNNIVYDALIDGFCKAAKLDEAQEVFVKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNVVIYTEMIDGLCKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCSPNFVTYTVLINHCCASGCLDEAYALLDEMKQTYWPKHVSSYCKVVEGYNREFILSLGILEEVEKNDATPIILLYRVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNMYTTLIYSFSKAMKIDQAFELYNDMIRQGVIPDLGTFVHLIMGLVKVSRWEEALQLSDSICQMDINWLQREDAP | 1015 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 4853841 | 4857125 | + | CmaCh17G005880.1 | Cma17g00588 | 312483 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 322 | 356 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 729 | 763 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 255 | 289 | IPR002885 | - | |
| Cma17g00588 | 1015 | Gene3D | Tetratricopeptide repeat domain | 568 | 647 | IPR011990 | GO:0005515 | |
| Cma17g00588 | 1015 | Gene3D | Tetratricopeptide repeat domain | 117 | 266 | IPR011990 | GO:0005515 | |
| Cma17g00588 | 1015 | Gene3D | Tetratricopeptide repeat domain | 267 | 373 | IPR011990 | GO:0005515 | |
| Cma17g00588 | 1015 | Pfam | PPR repeat family | 658 | 707 | IPR002885 | - | |
| Cma17g00588 | 1015 | Pfam | PPR repeat family | 393 | 440 | IPR002885 | - | |
| Cma17g00588 | 1015 | Pfam | PPR repeat family | 572 | 621 | IPR002885 | - | |
| Cma17g00588 | 1015 | Pfam | PPR repeat family | 798 | 846 | IPR002885 | - | |
| Cma17g00588 | 1015 | Pfam | PPR repeat family | 502 | 551 | IPR002885 | - | |
| Cma17g00588 | 1015 | Pfam | PPR repeat family | 321 | 368 | IPR002885 | - | |
| Cma17g00588 | 1015 | Pfam | PPR repeat family | 942 | 987 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 939 | 973 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 764 | 798 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 659 | 693 | IPR002885 | - | |
| Cma17g00588 | 1015 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 106 | 1010 | - | - | |
| Cma17g00588 | 1015 | Pfam | PPR repeat | 299 | 316 | IPR002885 | - | |
| Cma17g00588 | 1015 | Pfam | PPR repeat | 906 | 931 | IPR002885 | - | |
| Cma17g00588 | 1015 | Pfam | PPR repeat | 477 | 500 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 573 | 607 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 468 | 502 | IPR002885 | - | |
| Cma17g00588 | 1015 | Gene3D | Tetratricopeptide repeat domain | 868 | 1014 | IPR011990 | GO:0005515 | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 694 | 728 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 392 | 426 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 799 | 833 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 538 | 572 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 608 | 642 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 834 | 868 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 503 | 537 | IPR002885 | - | |
| Cma17g00588 | 1015 | Gene3D | Tetratricopeptide repeat domain | 648 | 721 | IPR011990 | GO:0005515 | |
| Cma17g00588 | 1015 | Gene3D | Tetratricopeptide repeat domain | 790 | 866 | IPR011990 | GO:0005515 | |
| Cma17g00588 | 1015 | Gene3D | Tetratricopeptide repeat domain | 497 | 567 | IPR011990 | GO:0005515 | |
| Cma17g00588 | 1015 | Gene3D | Tetratricopeptide repeat domain | 722 | 789 | IPR011990 | GO:0005515 | |
| Cma17g00588 | 1015 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 106 | 1010 | - | - | |
| Cma17g00588 | 1015 | Gene3D | Tetratricopeptide repeat domain | 374 | 496 | IPR011990 | GO:0005515 | |
| Cma17g00588 | 1015 | Pfam | Pentatricopeptide repeat domain | 209 | 266 | IPR002885 | - | |
| Cma17g00588 | 1015 | Pfam | Pentatricopeptide repeat domain | 717 | 772 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 697 | 730 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 325 | 358 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 258 | 290 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 540 | 574 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 942 | 974 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 395 | 426 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 610 | 636 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 575 | 609 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 360 | 392 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 731 | 765 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 801 | 834 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 661 | 694 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 506 | 539 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 836 | 862 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 766 | 800 | IPR002885 | - | |
| Cma17g00588 | 1015 | TIGRFAM | PPR: pentatricopeptide repeat domain | 477 | 504 | IPR002885 | - | |
| Cma17g00588 | 1015 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 357 | 391 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma17g00588 | - | - | - | mcha:111018584 | 1763.43 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma17g00588 | Cma-Chr17:4853841 | Cma05g00972 | Cma-Chr5:7858478 | 1.70E-73 | dispersed | |
| Cma19g00827 | Cma-Chr19:7863712 | Cma17g00588 | Cma-Chr17:4853841 | 5.32E-06 | dispersed | |
| Cma17g00588 | Cma-Chr17:4853841 | Cma04g00280 | Cma-Chr4:1379121 | 4.78E-74 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g1146 | . | . | . | . | . | . | . | . | . | Cmo17g00570 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla08g00440 | Cam08g0873 | Cec08g0452 | Cco08g0574 | Clacu08g0589 | . | Cre08g0412 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cma17g00588 | . | Car17g00544 | Cpe12g00501 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009746 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 32 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cma17g00588 | Cma_Chr17 | FPKM | 0.54944 | 0.69019 | 0.909451 | 1.112455 | 1.864079 | 1.661439 | 1.992562 | 1.360144 | 1.434832 | 1.697471 |