Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00592 ATGCTATTTGCTCGATCGTTTCTCCGCTCCCACCTTAAGCCCTCCGACATTCCTCGCCATTCTCCGCCTTTTTCTTCCCTCTTTTCGTCTCTTTCAGCTTCTTCCGCTGCGTCTATTGAAGCCGATAGGCTTCTCAGAGATGGCCCCAGGAATAATTGGACTCGACAGGAGATTCGCGACATTTACGACTCTCCCGTTCTCGATCTGCTTTTCCATGGCGCGCAAGTTCATAGGCACACACACAATTTCCGGGAGGTGCAGCAGTGTACCCTCCTTTCAATCAAAACAGGTGGGTGTAGTGAGGATTGTTCCTACTGTCCTCAATCATCGAGATATGACACTGGAGTGAAATCCCAAAAACTTATGACCAAGGATGTCGTGCTTGAGGCAGCCAAAAAGGCAAAAGAGGCTGGTAGCACAAGATTTTGTATGGGTGCTGCATGGAGAGATACAATAGGAAGAAAAACTAATTTCAATCAGATCCTTGATTATGTAAAAGAAATAAGAGAGATGGGGATGGAGGTCTGCTGCACTCTGGGCATGATAGAGAAGCAACAAGCTATTGACCTCAAGAAGGCCGGCCTCACAGCTTATAACCACAACCTCGACACATCAAGGGAATACTACCCAAATATTATTACCACGAGGAGCTATGATGAGCGTTTAAAAACTCTAGAATTTGTTCGTGATGCTGGAATCAATGTCTGCTCTGGAGGAATAATTGGGCTTGGAGAGGCAGAAGAGGACCGTGTCGGTTTGCTGCATACCTTGGCGACTCTGCCCACACACCCTGAGAGTGTTCCCATCAATGCGCTGGTTGCAGTGAAAGGAACCCCTCTTCAAGATCAAAAACCGGTTGAAATATGGGAGATGATTCGAATGATCGCTACAGCACGGATCACCATGCCAAAAGCAATGGTAAGGTTGTCCGCAGGTCGAGTGAAGTTCTCCGTGCCAGAGCAGGCATTATGCTTCCTTGCAGGAGCGAATTCTATCTTCACCGGGGAGAAACTGCTAACAATGCCCAATAACGACTTTGATGCTGATCAACACATGTTCAAGATGCTGGGTTTGATTCCAAAAGCTCCCAGTTTCACTGATGGTGCTGAGAAAGCCCCTGAAGAAGAGTCATTACAAGCTGCTTCCAATTAA 1152 47.14 MLFARSFLRSHLKPSDIPRHSPPFSSLFSSLSASSAASIEADRLLRDGPRNNWTRQEIRDIYDSPVLDLLFHGAQVHRHTHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKSQKLMTKDVVLEAAKKAKEAGSTRFCMGAAWRDTIGRKTNFNQILDYVKEIREMGMEVCCTLGMIEKQQAIDLKKAGLTAYNHNLDTSREYYPNIITTRSYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALVAVKGTPLQDQKPVEIWEMIRMIATARITMPKAMVRLSAGRVKFSVPEQALCFLAGANSIFTGEKLLTMPNNDFDADQHMFKMLGLIPKAPSFTDGAEKAPEEESLQAASN 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4905911 4911040 + CmaCh17G005920.1 Cma17g00592 312487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00592 383 SMART MiaB 89 297 IPR006638 GO:0003824|GO:0051536
Cma17g00592 383 SMART BATS_2 268 360 IPR010722 -
Cma17g00592 383 ProSiteProfiles Radical SAM core domain profile. 84 313 IPR007197 GO:0003824|GO:0051536
Cma17g00592 383 PANTHER BIOTIN SYNTHASE 30 376 IPR002684 GO:0004076|GO:0009102
Cma17g00592 383 Pfam Biotin and Thiamin Synthesis associated domain 268 358 IPR010722 -
Cma17g00592 383 Gene3D Aldolase class I 50 362 IPR013785 -
Cma17g00592 383 SFLD Radical SAM 49 363 IPR007197 GO:0003824|GO:0051536
Cma17g00592 383 Hamap Biotin synthase [bioB]. 51 361 IPR002684 GO:0004076|GO:0009102
Cma17g00592 383 SUPERFAMILY Radical SAM enzymes 51 361 - -
Cma17g00592 383 CDD Radical_SAM 96 296 - -
Cma17g00592 383 SFLD biotin synthase 49 363 IPR024177 -
Cma17g00592 383 PIRSF Biotin_synth 35 367 IPR024177 -
Cma17g00592 383 TIGRFAM bioB: biotin synthase 61 358 IPR002684 GO:0004076|GO:0009102
Cma17g00592 383 Pfam Radical SAM superfamily 96 254 IPR007197 GO:0003824|GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00592 K01012 bioB; biotin synthase [EC:2.8.1.6] - csv:101222084 703.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1189 . . . . . . . . . Cmo17g00574 . . . . . . . . . . . . . . Cla08g00450 Cam08g0879 Cec08g0460 Cco08g0582 Clacu08g0597 . Cre08g0419 Cone14ag0578 . . . . . . . . Blo07g00095 Bda11g00466 . . Bpe13g00733 . Bma06g01424 . . . . Cma17g00592 . Car17g00547 Cpe12g00504 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010238 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00592 Cma_Chr17 FPKM 11.246778 11.408497 13.533372 12.850583 28.3603 27.603813 30.598845 12.702134 13.841199 12.634008