Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00593 ATGGGATCGTGCCTCTCTGGGGACCGCAATAATCACGCGATCCCTTATTCTGAGATCGCTTCCACTTCTCGTGGTGATGGCGTTGTTACCAGAAGCAACTCCAATAGGAAGATTACGAAAAAGAGTTCTTCTCCCTCTATCGACTCTCCAAGGGAGATGTCGCTTCATCGAGTTCCTGGCCGGATGTTTTTGAATGGATCAACTGATCATGCCTCGCTCTTTACTAGGCAAGGCAAGAAAGGCATCAATCAGGACGCTATGATTGTTTGGGAGAATTTTGGTTCAAAAGCAGATACAATATTTTGCGGAGTCTTTGATGGACATGGTCCTTTCGGCCATATGGTTGCAAAGAAAGTCAGAGACTCTCTTCCTCTAAAACTGAGTGCACAGTGGGAATTGGGATGTCAAGTCTCTCCACCAGTGCTGGTTAACAAGGATTCTGGAACCTCTCATTGCGATCCTGGTCGTCTGGGCAGTTCCAATGACATTCATGTCATGTTGAAAGAGTCTTTTCTGAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCATATATCGATTGCTATACCAGTGGTACAACATCAGTTGCTTTGATCAAACAGGGTCGGGATCTTATCATCGGAAATGTCGGGGACTCGAGGGCTGTTTTAGGTACCAGAGATCAATCGAACTCTCTCATTGCAGTTCAGTTGACTGTGGACCTCAAGCCAAATCTTCCAAGAGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCAAAATGAACCCGAGACTTTTCGGGTTTGGCTTCCCGATAGTGATTCTCCTGGCCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTGAAAGACTTTGGGTTGATAGCCGTCCCTGATGTTTCTTGTCATCATCTTAATGAGAAAGATGAGTTTGTTGTACTGGCTACCGATGGGGTTTGGGATGTACTTTCAAACGAAGAGGTTGTGGCAATTGTTGCATCTTCTCCGAGATCCTCTGCAGCTCGTATCGTTGTGGACACGGCTTCTCGAGCATGGAGATCGAAGTACCCTACTGCCAAGGTTGATGATTGTGCCGTAGTCTGCTTGTACCTGGACTCTAGCGAGAGTGCTACAGTGACAACTCAGGAGCAGCAGGAGCTCACCAAAGACATGGAAACTTAG 1179 46.4 MGSCLSGDRNNHAIPYSEIASTSRGDGVVTRSNSNRKITKKSSSPSIDSPREMSLHRVPGRMFLNGSTDHASLFTRQGKKGINQDAMIVWENFGSKADTIFCGVFDGHGPFGHMVAKKVRDSLPLKLSAQWELGCQVSPPVLVNKDSGTSHCDPGRLGSSNDIHVMLKESFLKAFKVMDKELKLHPYIDCYTSGTTSVALIKQGRDLIIGNVGDSRAVLGTRDQSNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQNEPETFRVWLPDSDSPGLAMARAFGDFCLKDFGLIAVPDVSCHHLNEKDEFVVLATDGVWDVLSNEEVVAIVASSPRSSAARIVVDTASRAWRSKYPTAKVDDCAVVCLYLDSSESATVTTQEQQELTKDMET 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4918065 4922118 - CmaCh17G005930.1 Cma17g00593 312488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00593 392 MobiDBLite consensus disorder prediction 16 53 - -
Cma17g00593 392 ProSiteProfiles PPM-type phosphatase domain profile. 70 370 IPR001932 -
Cma17g00593 392 MobiDBLite consensus disorder prediction 16 50 - -
Cma17g00593 392 Gene3D - 65 372 IPR036457 -
Cma17g00593 392 PANTHER ALPHABET, ISOFORM E-RELATED 1 379 - -
Cma17g00593 392 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 379 - -
Cma17g00593 392 CDD PP2Cc 70 370 IPR001932 -
Cma17g00593 392 SMART PP2C_4 59 368 IPR001932 -
Cma17g00593 392 Pfam Protein phosphatase 2C 84 337 IPR001932 -
Cma17g00593 392 SUPERFAMILY PP2C-like 69 371 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01014 Cma-Chr16:7794965 Cma17g00593 Cma-Chr17:4918065 1.28E-145 dispersed
Cma17g00593 Cma-Chr17:4918065 Cma20g00555 Cma-Chr20:2692702 1.78E-130 dispersed
Cma17g00593 Cma-Chr17:4918065 Cma08g00078 Cma-Chr8:406155 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00593 - - csv:101222320 668.307