Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00596 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAAATGGACATGGGTATGGGTTATTACAGCGATGACGACGATCCTGACGCTGAAGATTTCGTGGACGACGAAACCGATGATTACTTCGACTCACGTCGACGCGAGTTGTTTGGGCGGGGAGAAAAGTTGGATATTTTGTATGTCTGGTTTTGTAACGAAACTCGCACTGGAGTACTGACGCAAAATTATACCATACTAAATGAGTCAGATATAAGACAACGCCAAGAGGACGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCGTCAATTGTGTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCTGATGAAACTAGTGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCAACTGCTGGGAAGGCTACATTACCACATCAATTAATGACGGTCCTGGATGTCTGGCGTTGAGATGTCCTGATCCTTCTTGCAGTGCTGTGGTTGATCAAGACATGATTAACTCATTGGTCTCGAATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCCGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCCGGCAATGGAAATTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCAACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAATTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTACATTTGAATTTTGCTGGCTGTGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAAAGATACACTCACTATTACGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGGCATGTACTAAACTATCCAACTATGAAACATCAGATTTCTTTGGTTTATTGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATTCATATGGATATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTGCTCCAGTTCGTCAGTGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAGCTTGCTGGTCTAACCAGTGTTACTCGAAATTACTTTGAGAACCTAGTTAGAGCATTAGAGAATGGGCTTTCGGATGTGAATTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGGACGAGGTAAGGGAATCAGTCGAATCGGGAGCTCAACCAGAAGTGGCGATAATGCTGCAACTCATTGGTCATGTGAACACTGTACGTTTGTGAACACAAAATCTAGTAGCACATGCGAGATGTGCCATCAACAACACCATTGA 1908 43.45 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDFVDDETDDYFDSRRRELFGRGEKLDILYVWFCNETRTGVLTQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETSVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCANCWEGYITTSINDGPGCLALRCPDPSCSAVVDQDMINSLVSNEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCTFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQACTKLSNYETSDFFGLLIIECRRVLKWTYSYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFVSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGRSGRGKGISRIGSSTRSGDNAATHWSCEHCTFVNTKSSSTCEMCHQQHH 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4947053 4954411 + CmaCh17G005960.1 Cma17g00596 312491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00596 635 Pfam IBR domain, a half RING-finger domain 313 361 IPR002867 -
Cma17g00596 635 Pfam IBR domain, a half RING-finger domain 234 296 IPR002867 -
Cma17g00596 635 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 85 580 IPR031127 GO:0004842|GO:0016567
Cma17g00596 635 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 85 580 - -
Cma17g00596 635 Coils Coil 382 402 - -
Cma17g00596 635 ProSitePatterns Zinc finger RanBP2-type signature. 611 630 IPR001876 -
Cma17g00596 635 SUPERFAMILY Ran binding protein zinc finger-like 607 633 IPR036443 -
Cma17g00596 635 SMART ibrneu5 234 296 IPR002867 -
Cma17g00596 635 SMART ibrneu5 300 370 IPR002867 -
Cma17g00596 635 ProSiteProfiles Zinc finger RanBP2 type profile. 602 635 IPR001876 -
Cma17g00596 635 SUPERFAMILY RING/U-box 162 243 - -
Cma17g00596 635 CDD RING-HC_RBR_TRIAD1_like 165 215 - -
Cma17g00596 635 Gene3D - 605 635 - -
Cma17g00596 635 Gene3D - 292 564 - -
Cma17g00596 635 MobiDBLite consensus disorder prediction 565 608 - -
Cma17g00596 635 ProSiteProfiles TRIAD supradomain profile. 161 374 IPR044066 -
Cma17g00596 635 ProSiteProfiles Zinc finger RING-type profile. 165 211 IPR001841 -
Cma17g00596 635 MobiDBLite consensus disorder prediction 594 608 - -
Cma17g00596 635 SUPERFAMILY RING/U-box 315 363 - -
Cma17g00596 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 247 IPR013083 -
Cma17g00596 635 SMART zf_4 609 633 IPR001876 -
Cma17g00596 635 SUPERFAMILY RING/U-box 235 303 - -
Cma17g00596 635 MobiDBLite consensus disorder prediction 565 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00596 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 1083.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00420 Cma-Chr2:2129241 Cma17g00596 Cma-Chr17:4947053 4.41E-60 dispersed
Cma12g00993 Cma-Chr12:7900408 Cma17g00596 Cma-Chr17:4947053 0 dispersed
Cma17g00596 Cma-Chr17:4947053 Cma20g00867 Cma-Chr20:4161716 6.17E-62 dispersed
Cma19g00222 Cma-Chr19:1509558 Cma17g00596 Cma-Chr17:4947053 1.76E-15 transposed
Cma17g00596 Cma-Chr17:4947053 Cma08g00211 Cma-Chr8:1184895 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00420 . 164 590 ARIADNE family AT4G34370 71.6 2.6e-182 635.6
Cma20g00867 . 164 589 ARIADNE family AT4G34370 71.8 2.2e-181 632.5
Cma02g00420 . 58 527 ARIADNE family AT2G16090 78.2 1.2e-223 773.1
Cma20g00867 . 58 542 ARIADNE family AT2G16090 76.8 2.3e-222 768.8
Cma20g00867 . 38 543 ARIADNE family AT3G27710 61.8 1.3e-183 640.2
Cma02g00420 . 36 522 ARIADNE family AT3G27710 62.4 8.7e-183 637.5
Cma02g00420 . 47 522 ARIADNE family AT3G27720 54.4 7.3e-144 508.1
Cma20g00867 . 44 522 ARIADNE family AT3G27720 53.6 8.9e-142 501.1
Cma12g00993 . 26 542 ARIADNE family AT1G05890 65.5 4.0e-221 765.0
Cma08g00211 . 56 524 ARIADNE family AT1G05890 73.6 1.3e-216 750.0
Cma17g00596 . 1 577 ARIADNE family AT1G05890 62.4 2.3e-213 739.2
Cma12g00993 . 26 576 ARIADNE family AT1G65430 75.0 6.4e-253 870.5
Cma08g00211 . 16 583 ARIADNE family AT1G65430 69.7 2.1e-243 839.0
Cma17g00596 . 16 631 ARIADNE family AT1G65430 64.3 2.5e-236 815.5
Cma12g00993 . 24 461 ARIADNE family AT2G31780 55.3 3.4e-148 522.3
Cma08g00211 . 53 449 ARIADNE family AT2G31780 57.6 1.5e-143 506.9
Cma17g00596 . 86 496 ARIADNE family AT2G31780 55.7 4.9e-139 491.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00596 Cma_Chr17 FPKM 29.093904 29.291094 32.848625 33.398506 20.188517 21.394867 18.66041 41.002468 39.061703 37.919327