Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00596 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAAATGGACATGGGTATGGGTTATTACAGCGATGACGACGATCCTGACGCTGAAGATTTCGTGGACGACGAAACCGATGATTACTTCGACTCACGTCGACGCGAGTTGTTTGGGCGGGGAGAAAAGTTGGATATTTTGTATGTCTGGTTTTGTAACGAAACTCGCACTGGAGTACTGACGCAAAATTATACCATACTAAATGAGTCAGATATAAGACAACGCCAAGAGGACGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCGTCAATTGTGTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCTGATGAAACTAGTGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCAACTGCTGGGAAGGCTACATTACCACATCAATTAATGACGGTCCTGGATGTCTGGCGTTGAGATGTCCTGATCCTTCTTGCAGTGCTGTGGTTGATCAAGACATGATTAACTCATTGGTCTCGAATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCCGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCCGGCAATGGAAATTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCAACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAATTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTACATTTGAATTTTGCTGGCTGTGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAAAGATACACTCACTATTACGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGGCATGTACTAAACTATCCAACTATGAAACATCAGATTTCTTTGGTTTATTGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATTCATATGGATATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTGCTCCAGTTCGTCAGTGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAGCTTGCTGGTCTAACCAGTGTTACTCGAAATTACTTTGAGAACCTAGTTAGAGCATTAGAGAATGGGCTTTCGGATGTGAATTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGGACGAGGTAAGGGAATCAGTCGAATCGGGAGCTCAACCAGAAGTGGCGATAATGCTGCAACTCATTGGTCATGTGAACACTGTACGTTTGTGAACACAAAATCTAGTAGCACATGCGAGATGTGCCATCAACAACACCATTGA 1908 43.45 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDFVDDETDDYFDSRRRELFGRGEKLDILYVWFCNETRTGVLTQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETSVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCANCWEGYITTSINDGPGCLALRCPDPSCSAVVDQDMINSLVSNEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCTFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQACTKLSNYETSDFFGLLIIECRRVLKWTYSYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFVSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGRSGRGKGISRIGSSTRSGDNAATHWSCEHCTFVNTKSSSTCEMCHQQHH 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4947053 4954411 + CmaCh17G005960.1 Cma17g00596 312491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00596 635 Pfam IBR domain, a half RING-finger domain 313 361 IPR002867 -
Cma17g00596 635 Pfam IBR domain, a half RING-finger domain 234 296 IPR002867 -
Cma17g00596 635 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 85 580 IPR031127 GO:0004842|GO:0016567
Cma17g00596 635 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 85 580 - -
Cma17g00596 635 Coils Coil 382 402 - -
Cma17g00596 635 ProSitePatterns Zinc finger RanBP2-type signature. 611 630 IPR001876 -
Cma17g00596 635 SUPERFAMILY Ran binding protein zinc finger-like 607 633 IPR036443 -
Cma17g00596 635 SMART ibrneu5 234 296 IPR002867 -
Cma17g00596 635 SMART ibrneu5 300 370 IPR002867 -
Cma17g00596 635 ProSiteProfiles Zinc finger RanBP2 type profile. 602 635 IPR001876 -
Cma17g00596 635 SUPERFAMILY RING/U-box 162 243 - -
Cma17g00596 635 CDD RING-HC_RBR_TRIAD1_like 165 215 - -
Cma17g00596 635 Gene3D - 605 635 - -
Cma17g00596 635 Gene3D - 292 564 - -
Cma17g00596 635 MobiDBLite consensus disorder prediction 565 608 - -
Cma17g00596 635 ProSiteProfiles TRIAD supradomain profile. 161 374 IPR044066 -
Cma17g00596 635 ProSiteProfiles Zinc finger RING-type profile. 165 211 IPR001841 -
Cma17g00596 635 MobiDBLite consensus disorder prediction 594 608 - -
Cma17g00596 635 SUPERFAMILY RING/U-box 315 363 - -
Cma17g00596 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 247 IPR013083 -
Cma17g00596 635 SMART zf_4 609 633 IPR001876 -
Cma17g00596 635 SUPERFAMILY RING/U-box 235 303 - -
Cma17g00596 635 MobiDBLite consensus disorder prediction 565 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00420 Cma-Chr2:2129241 Cma17g00596 Cma-Chr17:4947053 4.41E-60 dispersed
Cma12g00993 Cma-Chr12:7900408 Cma17g00596 Cma-Chr17:4947053 0 dispersed
Cma17g00596 Cma-Chr17:4947053 Cma20g00867 Cma-Chr20:4161716 6.17E-62 dispersed
Cma19g00222 Cma-Chr19:1509558 Cma17g00596 Cma-Chr17:4947053 1.76E-15 transposed
Cma17g00596 Cma-Chr17:4947053 Cma08g00211 Cma-Chr8:1184895 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00596 K11968 - csv:101223037 1083.55