Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00599 ATGAGTGCAACAGGTGTATGCCCAACCGAGGATGCCATACTTGCATTATTGGATTACTTAGTTGAACCTATGCTTCCTTCAAAGTCATCTTCAATAGAAAATCCACCACTAGCTCTACTGCAATCAGTTGCAAAACAGATGCATGCCGTTGTTTTGTTATACAACTACTACCACAGGAAACAACACCCACATCTTGAATTTTTGAGTTTTGAGGCATTTTGCAAATTAGCTGTGGTCGTTAAACCAGCTTTGTTGTCTCACATGAAACTCATGCAAAGCTCTGATGATATTGAATTGGAAAATCCCGAGAAGCAGCTTTCTCCATCCGAAAAAGCAATTATGGATGCATGTGATTTAGCCACTTGTCTATATACATCAAAAGATGAAAATATAGAGGGCTGGCCCCTTTCCAAGGTTGCCGTTTTTTTGATCGACTCCAAGAAGGAGCATTGCCATTTGCTGTTTAGTTCCATCACTCAAGGAGTTTGGTCTGTCATTGAACAAAATTTAGATACCTATGAATGCCAACCAAAAAGCGTGGAAGAGGAAAAACATGTAAACAAAAAGAAAAGAGTGATTAAGAAACCTTCAAAAGAGGGGCTAGTTGTTGTTGAAACTAAGACTCAGCAGCTTGCATATTCAGCAGTCAAGGAAGCAACTGGCATTAATCAACACGATCTCAAAATTTTAGAAAGTCACGTTGCCTACTCTCTAAGTAAAGAAAAATCAGCAGTCTACTTCTACATGATGCAGTGCACTCGATCAGCAACTGAAGATGTAATTCAAGTTCCAATAAAAGATGCCTTCGACAGTTTGCAGGATTCGTTGTTTAAAAAAAATGGTAGGAGATGGAGCGTTACTTCAAAAGTTGAGTACTACCACATTCTTCCTTATGTGAAGATGGTGCTAACCTGGTTTCGTAGGGAAACTTTAACAGATAATTTGGGAGTCGTAGGTGGAGAAAAGATTGATGAAAACCTGAACAAGCCTAAGAGAAAAGATGTAACCAGGAAGCTTGGAACTCAAAACAATCAAGACGATGCTACTACAAACAATATGAATAAAGGCACTAGCATTTATGATGCAGTATTGGAGAGATTGCCTGATAAAACGAACTGTATGAGTAGTTTGCATGATGCGATCTGCAGGCCCCAGAGTCCTAGTGTGGATGACTTGGTTCCCTCCAATCCAATGGAGAAGAGGAAGGGTGTACTGACTCCCACCCAAGTTATCATGTCATATGTAAAGAAAATACATGGTAGTCCAGTTTACAATCACTATGAAGCAACTATCCCATGTTCGGTGACTGGTAGGCAAGTTTACAATCACTATGAAGCAACTATCCCATGTACAGTGAATGAATCGAAGGCTTCAGAGAGTGGTATCAAAGTCGAGGATGGAATACTAGCAACAAACCCGTGTATTGCTGAAGGCAGTGGTGAAAAGGTTGCTTCTGGCAATCTCTCTGACAATATTTCAGATCAAAATAGGAATGACGATCATGCTCTCATCACCTGTCAATCGAACGCAAAGCATCTTTCCAAGATGCAGGCAATTATTTCGAAAGAAACAGCATTGTCACAAGCTGCCATTAAAGCTCTAATTAGAAAGAGGGATAAACTGTCTCATCAACAGCGCATAATTGAAGATGAGATAGCTCAGTGTGATAAAAATATGCAGACAATATTAAGGGGTGATGAAGATGATTTTGTTGTAAAGCTGGATTCTGTGATTGAATGTTGTAATGATGTATGTCTAAGAAGCGCAGCTGAAGACAAACCTTATCAATACTCTGAAGAAAACTGCTCATCTCAACTAGTCACAAGGAAGAGATTGTCAGAAGAAATTCTCTGCATACGGAATCCATGTCAGGAACTGGACGATATATGTCATAAGAATAATTGGATATTGCCAGTCTATGGAGTTTCGTCATCAGATGGTGGATTCCAAGCTAATGTAATATTAAAAGGGATGGATTTTGAGTATTCAAGCAACGGCGAAGTGTGTCACAATCCTCGTGAGGCCAGGGAATCAGCTGCAATGAAGATGTTAGGTCAACTATGGAGGATGGCGGCAAGTCAGCCCTAG 2088 40.09 MSATGVCPTEDAILALLDYLVEPMLPSKSSSIENPPLALLQSVAKQMHAVVLLYNYYHRKQHPHLEFLSFEAFCKLAVVVKPALLSHMKLMQSSDDIELENPEKQLSPSEKAIMDACDLATCLYTSKDENIEGWPLSKVAVFLIDSKKEHCHLLFSSITQGVWSVIEQNLDTYECQPKSVEEEKHVNKKKRVIKKPSKEGLVVVETKTQQLAYSAVKEATGINQHDLKILESHVAYSLSKEKSAVYFYMMQCTRSATEDVIQVPIKDAFDSLQDSLFKKNGRRWSVTSKVEYYHILPYVKMVLTWFRRETLTDNLGVVGGEKIDENLNKPKRKDVTRKLGTQNNQDDATTNNMNKGTSIYDAVLERLPDKTNCMSSLHDAICRPQSPSVDDLVPSNPMEKRKGVLTPTQVIMSYVKKIHGSPVYNHYEATIPCSVTGRQVYNHYEATIPCTVNESKASESGIKVEDGILATNPCIAEGSGEKVASGNLSDNISDQNRNDDHALITCQSNAKHLSKMQAIISKETALSQAAIKALIRKRDKLSHQQRIIEDEIAQCDKNMQTILRGDEDDFVVKLDSVIECCNDVCLRSAAEDKPYQYSEENCSSQLVTRKRLSEEILCIRNPCQELDDICHKNNWILPVYGVSSSDGGFQANVILKGMDFEYSSNGEVCHNPREARESAAMKMLGQLWRMAASQP 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4977413 4999009 + CmaCh17G005990.1 Cma17g00599 312494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00599 695 PANTHER ALEURONE LAYER MORPHOGENESIS PROTEIN 1 694 - -
Cma17g00599 695 Gene3D - 592 688 - -
Cma17g00599 695 SUPERFAMILY dsRNA-binding domain-like 617 687 - -
Cma17g00599 695 MobiDBLite consensus disorder prediction 333 354 - -
Cma17g00599 695 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 624 687 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00599 - - - csv:101206764 1056.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00599 Cma-Chr17:4977413 Cma08g00209 Cma-Chr8:1172727 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1202 . . . . . . . . Cmo08g00212 Cmo17g00579 . . . . . . . . . . . . . . Cla08g00465 Cam08g0891 Cec08g0478 Cco08g0590 Clacu08g0609 . Cre08g0430 Cone14ag0571 . . . . . . . . Blo07g00086 Bda11g00456 . . . . Bma06g01416 . . . . Cma17g00599 Car08g00185 Car17g00553 Cpe12g00509 Cpe17g01098 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005310 1 4 1 1 0 1 3 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 1 2 2 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00599 Cma_Chr17 FPKM 1.160405 0.472163 1.585012 1.928642 6.407696 6.072405 7.046702 2.934364 3.082647 3.214643