Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00603 ATGGCTTCTAACCACGGTTCTAGCCGCGGCGCGTTACCCACCGGCTCTGGCTTGATCGTCAGTTTCGGCGAGATGCTGATCGATTTTGTCCCCACAGTTTCCGGCGTCTCTTTGGCAGAGGCGCCTGGATTTCTCAAGGCTCCCGGCGGCGCTCCAGCAAACGTCGCGATCGCCGTTAGCCGACTCGGCGGACGCGCTGCCTTCGTTGGAAAGCTTGGCGAAGATGAGTTTGGACGTATGTTGGAAGGAATCGTTAAGGAAAACGGCGTTTCCGCCGCCGGGATCCGATTCGATCAAGGCGCAAGAACTGCCTTGGCTTTTGTCACTCTACGCGCCGACGGTGAACGTGAGTTTATGTTCTACCGGAACCCTAGTGCCGATATGCTTCTCAAGCCGGAGGAGTTGGATCTCGATCTCATCAGATCCGCGAAGATCTTTCACTATGGATCGATAAGCTTGATCGTGGAGCCGTGCAGATCGGCCCATATGAAGGCGATGGAGGAGGCGAAGAAAGCAGGTGTTCTGCTTTCATACGATCCAAATCTGAGGCTGCCACTGTGGCCGTCAGCAAATGAGGCCCGTGAACAGATCAAGAGCATTTGGAACAAGGCCGACATCATCAAGGTGAGCGATGATGAGCTGAAATTCCTGACGCAAAGAGACAAGGTGGATGATGAAACCGCCATGTCTCTGTGGCACGATGGGTTGAAGCTCCTCCTTGTCACTCTTGGCGAGAATGGGTGCAGATACTACACCAAGAACTTCCGGGGGTCTGTGGATCCTTTTAAGGTTAAAGCAGTGGACACTACTGGAGCTGGTGACTCATTTGTGGGTGCTCTTCTTTGCAAGATTGTGGACGACCTATCTGTGCTCCAGGACGAGAAGAAATTGAGGGAGATACTAACGTTTGCGAATGCTTGTGGAGCCATTACAACAACCAAGAAGGGAGCAATTCCAGCTCTTCCATCGGAGGCCGACGTCGCAGCTTTGATCAAGGCTTCTCCATAG 1008 53.27 MASNHGSSRGALPTGSGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGRAAFVGKLGEDEFGRMLEGIVKENGVSAAGIRFDQGARTALAFVTLRADGEREFMFYRNPSADMLLKPEELDLDLIRSAKIFHYGSISLIVEPCRSAHMKAMEEAKKAGVLLSYDPNLRLPLWPSANEAREQIKSIWNKADIIKVSDDELKFLTQRDKVDDETAMSLWHDGLKLLLVTLGENGCRYYTKNFRGSVDPFKVKAVDTTGAGDSFVGALLCKIVDDLSVLQDEKKLREILTFANACGAITTTKKGAIPALPSEADVAALIKASP 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5079298 5081715 + CmaCh17G006030.1 Cma17g00603 312498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00603 335 PANTHER BNAA04G18320D PROTEIN 22 328 - -
Cma17g00603 335 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 268 281 IPR002173 GO:0016773
Cma17g00603 335 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 49 73 IPR002173 GO:0016773
Cma17g00603 335 Pfam pfkB family carbohydrate kinase 18 323 IPR011611 -
Cma17g00603 335 PRINTS Ribokinase signature 44 63 IPR002139 GO:0016301
Cma17g00603 335 PRINTS Ribokinase signature 199 214 IPR002139 GO:0016301
Cma17g00603 335 PRINTS Ribokinase signature 239 250 IPR002139 GO:0016301
Cma17g00603 335 Gene3D - 17 334 IPR029056 -
Cma17g00603 335 SUPERFAMILY Ribokinase-like 19 331 IPR029056 -
Cma17g00603 335 PANTHER HEXOKINASE FAMILY MEMBER 22 328 - -
Cma17g00603 335 CDD bac_FRK 18 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00603 K00847 E2.7.1.4, scrK; fructokinase [EC:2.7.1.4] - csv:101213366 605.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01023 Cma-Chr2:6082517 Cma17g00603 Cma-Chr17:5079298 1.34E-140 dispersed
Cma04g00654 Cma-Chr4:3347435 Cma17g00603 Cma-Chr17:5079298 1.75E-16 dispersed
Cma06g00256 Cma-Chr6:1272964 Cma17g00603 Cma-Chr17:5079298 1.76E-56 dispersed
Cma08g00301 Cma-Chr8:1718908 Cma17g00603 Cma-Chr17:5079298 1.77E-10 dispersed
Cma14g00093 Cma-Chr14:419137 Cma17g00603 Cma-Chr17:5079298 5.05E-22 dispersed
Cma14g00850 Cma-Chr14:4345373 Cma17g00603 Cma-Chr17:5079298 4.05E-149 dispersed
Cma15g01395 Cma-Chr15:8794994 Cma17g00603 Cma-Chr17:5079298 5.90E-119 dispersed
Cma19g00369 Cma-Chr19:4161337 Cma17g00603 Cma-Chr17:5079298 1.34E-06 dispersed
Cma17g00603 Cma-Chr17:5079298 Cma08g00200 Cma-Chr8:1109739 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1238 Blo01g00197 Blo12g00260 Bda03g00976 . Bpe04g00903 . . . Cmo08g00204 Cmo17g00583 . . . . . . . . . . . . . . Cla06g00083 Cam06g0141 Cec06g0090 Cco06g0087 Clacu06g0090 Cmu06g0088 Cre06g0861 . . . . . . . . . . . . Bpe05g00976 . . . Sed09g0418 . . . Cma17g00603 Car08g00178 Car17g00570 Cpe12g00513 Cpe17g01091 Bhi12g02522 Tan06g1586 Cmetu11g0190 . Hepe03g1051 . . . . . . . . . . . . Cme11g02461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004086 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 2 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00603 Cma_Chr17 FPKM 153.003769 168.139053 10.47565 9.94133 7.572381 8.756794 7.517504 41.741844 41.456963 40.226021