Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00606 ATGCAAAAGAGAGAGATGGAAGTGCAAGATCATGGTCACATAATTGAAGTATGTGGGGATGTGCAAGCTGTAGGGCCTAGCATTGTGGGAAGTAAAATTTGTGGGGATGCACCCTCTTGTGGATTTTCTGATGCAAACAATAGTTCAAATGATGCAAAGGAGCGAGCTGCATCCATGCGGAGGCTTTCCATAGCAGTTGTTCTCTGCATTGTTTTTATGAGTGTAGAAGTAGTGGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTGTTCTCACTCTGGGCCTCTGGTTGGGAGGCAACTCCGCGTCAGTCATATGGCTTCTTCCGCATCGAAATTCTTGGTGCTCTCGTTTCCATTCAAATGATCTGGCTTCTTGCTGGAATCCTTGTTTATGAAGCTATTGTCCGACTTATCAATGGTCCGAGTGAAGTCAAGGGGTTTCTCATGTTCGCTGTGTCTGCATTTGGGTTAGTTGTTAACATAGGTATGGCTCTGCTGCTAGGTCACGAATATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGCGCGCATGACCATGGTCATGGAAAACACGAACATGGTCATGGCAAACACGAACATGGCGGTGAAGGTCATGGGCATCATCATGGGATAAGTATTACTACGCACCACCACCACCATCATGAAGAAGGAAAGGGAGCTGCCAGCGATCATCATGCTCACAAGGAATCAGTAACTACATCCTTGCTTGAGGTTTGCTGTGAAGATGGAAGAAGTCATTCACCAAAGGTTATCAAGATGCAAAAGAAGCAACGAAATATAAATGTACAAGGGGCTTATCTTCATGTACTCGGAGATTCGATCCAAAGCATTGGGGTGATGATCGGGGGGGCAATCATATGGTATAAACCCGAATACATGATTCTTGATCTGATATCCGCCCTGATTTTCTCTGCAATTGTTCTGTGCACAACAATTCAAATGCTTCGAAATATCCTTGAGGTATTAATGGAGAGCACACCGCGAGAGATTGACGCAACAAAGCTCGAGAAGGGTTTGTGCGAGATGGATGAGGTAGTTGCAATACATGAACTGCACATCTGGGCCATAACTGTTGGGAAGATTCTATTGGCATGCCATGTTATAATAAAGCCGGAGGCTAATGCAGACATGGTATTGGATAATGTTATTGATTATATTAGAAGAGAGTACAACATTAGCCATGTCACCATTCAGATTGAGCGCCAGTAG 1287 44.29 MQKREMEVQDHGHIIEVCGDVQAVGPSIVGSKICGDAPSCGFSDANNSSNDAKERAASMRRLSIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPSEVKGFLMFAVSAFGLVVNIGMALLLGHEYGHAHSHGHSHGHGAHDHGHGKHEHGHGKHEHGGEGHGHHHGISITTHHHHHHEEGKGAASDHHAHKESVTTSLLEVCCEDGRSHSPKVIKMQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYMILDLISALIFSAIVLCTTIQMLRNILEVLMESTPREIDATKLEKGLCEMDEVVAIHELHIWAITVGKILLACHVIIKPEANADMVLDNVIDYIRREYNISHVTIQIERQ 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5130192 5136745 - CmaCh17G006060.1 Cma17g00606 312501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00606 428 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 355 426 IPR036837 -
Cma17g00606 428 Pfam Cation efflux family 64 349 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cma17g00606 428 SUPERFAMILY Cation efflux protein transmembrane domain-like 58 350 IPR027469 -
Cma17g00606 428 PANTHER METAL TOLERANCE PROTEIN A1 7 427 - -
Cma17g00606 428 MobiDBLite consensus disorder prediction 215 253 - -
Cma17g00606 428 Gene3D Cation efflux protein transmembrane domain 58 348 IPR027469 -
Cma17g00606 428 TIGRFAM CDF: cation diffusion facilitator family transporter 59 428 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cma17g00606 428 MobiDBLite consensus disorder prediction 193 253 - -
Cma17g00606 428 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 7 427 - -
Cma17g00606 428 MobiDBLite consensus disorder prediction 195 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00952 Cma-Chr2:5662435 Cma17g00606 Cma-Chr17:5130192 0 dispersed
Cma17g00606 Cma-Chr17:5130192 Cma14g00624 Cma-Chr14:3089802 7.63E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00606 K14689 - csv:101213602 621.313