Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00607 ATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCTAATAAGCTTGCGAGTAAACACCAGAGGCTTCTCCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGACATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCTATGAGCTCAAGTTGCATGAAGGACGTCGACAAGGTGAAGATGGAACCTCCGAACCCGAAGAACCCCCAGGTTCCTGCTAAAATGTCTCCCCAGCAAGTTCCTAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTCGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAGTTAGAATGGCTAGCAGAAATGGGACTCTTTGGCGAGCAGGTTCCTGAAGAAGCTTTAGCTGCTGCTGAAGTTCCCGAGCTTCCTACTTCGCACGCAGGTAGTGCATTCACATGCAGACCGACAAAGTCGAGCACGTCATACAAAAAGCCGAGGATCGAGATGGTAGACGATGAGGAGTTTTTTACAGTTCCTGATCTTGGATGA 714 47.76 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCMKDVDKVKMEPPNPKNPQVPAKMSPQQVPNFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPEEALAAAEVPELPTSHAGSAFTCRPTKSSTSYKKPRIEMVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5142890 5145943 + CmaCh17G006070.1 Cma17g00607 312502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00607 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cma17g00607 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma17g00607 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Cma17g00607 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma17g00607 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Cma17g00607 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cma17g00607 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cma17g00607 237 Gene3D Classic Zinc Finger 1 123 - -
Cma17g00607 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cma17g00607 237 CDD Bbox1_BBX-like 5 47 - -
Cma17g00607 237 CDD Bbox1_BBX-like 56 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00659 Cma-Chr4:3365505 Cma17g00607 Cma-Chr17:5142890 4.82E-46 dispersed
Cma12g00429 Cma-Chr12:2230092 Cma17g00607 Cma-Chr17:5142890 8.43E-38 dispersed
Cma16g00426 Cma-Chr16:2125173 Cma17g00607 Cma-Chr17:5142890 6.51E-09 dispersed
Cma17g00607 Cma-Chr17:5142890 Cma19g00687 Cma-Chr19:7115841 1.47E-34 dispersed
Cma17g00607 Cma-Chr17:5142890 Cma08g00194 Cma-Chr8:1096289 8.97E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36660 PF00643 zf-B_box 6.60E-08 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00607 - - csv:101215327 450.669