Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00607 ATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCTAATAAGCTTGCGAGTAAACACCAGAGGCTTCTCCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGACATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCTATGAGCTCAAGTTGCATGAAGGACGTCGACAAGGTGAAGATGGAACCTCCGAACCCGAAGAACCCCCAGGTTCCTGCTAAAATGTCTCCCCAGCAAGTTCCTAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTCGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAGTTAGAATGGCTAGCAGAAATGGGACTCTTTGGCGAGCAGGTTCCTGAAGAAGCTTTAGCTGCTGCTGAAGTTCCCGAGCTTCCTACTTCGCACGCAGGTAGTGCATTCACATGCAGACCGACAAAGTCGAGCACGTCATACAAAAAGCCGAGGATCGAGATGGTAGACGATGAGGAGTTTTTTACAGTTCCTGATCTTGGATGA 714 47.76 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCMKDVDKVKMEPPNPKNPQVPAKMSPQQVPNFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPEEALAAAEVPELPTSHAGSAFTCRPTKSSTSYKKPRIEMVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5142890 5145943 + CmaCh17G006070.1 Cma17g00607 312502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00607 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cma17g00607 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma17g00607 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Cma17g00607 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma17g00607 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Cma17g00607 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cma17g00607 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cma17g00607 237 Gene3D Classic Zinc Finger 1 123 - -
Cma17g00607 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cma17g00607 237 CDD Bbox1_BBX-like 5 47 - -
Cma17g00607 237 CDD Bbox1_BBX-like 56 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00607 - - - csv:101215327 450.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00659 Cma-Chr4:3365505 Cma17g00607 Cma-Chr17:5142890 4.82E-46 dispersed
Cma12g00429 Cma-Chr12:2230092 Cma17g00607 Cma-Chr17:5142890 8.43E-38 dispersed
Cma16g00426 Cma-Chr16:2125173 Cma17g00607 Cma-Chr17:5142890 6.51E-09 dispersed
Cma17g00607 Cma-Chr17:5142890 Cma19g00687 Cma-Chr19:7115841 1.47E-34 dispersed
Cma17g00607 Cma-Chr17:5142890 Cma08g00194 Cma-Chr8:1096289 8.97E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1241 Blo01g00195 . Bda03g00975 . Bpe04g00902 . . . Cmo08g00198 Cmo17g00588 . . . . . . . . . . . . . . Cla06g00088 Cam06g0132 . . Clacu06g0097 Cmu06g0095 Cre06g0866 . . Cone18ag0848 . . . . . . Blo07g00112 . . Bpe05g00975 . . Bma06g01437 . . . . Cma17g00607 Car08g00177 Car17g00573 . Cpe17g01088 . . . . . . . . . . . . . . . . . Cme11g02456
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00009 CST 1 379 Orphan Transcription Factor Family AT5G61850 66.6 4.0e-122 435.6
Cma11g00003 CST 1 330 Orphan Transcription Factor Family AT5G61850 62.0 5.2e-114 408.7
Cma17g00607 . 1 167 Orphan Transcription Factor Family AT1G06040 67.8 1.8e-60 229.6
Cma08g00194 . 1 161 Orphan Transcription Factor Family AT1G06040 69.0 1.2e-59 226.9
Cma16g00426 CST 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.5e-38 156.8
Cma04g00659 CST 1 109 Orphan Transcription Factor Family AT1G06040 67.9 3.3e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36660 PF00643 zf-B_box 6.60E-08 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00607 Cma_Chr17 FPKM 4.822464 5.388059 66.120529 68.115456 36.257465 28.491421 33.395889 23.934509 24.793499 22.796461