Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00609 ATGGCGAATCTCGTTCCTGGAGTGCTTCTCAAACTGCTACAGCACATGAACACAGATGTGAAGGTTGCTGGAGAACACAGGTCGGCGCTGTTGCAAGTTGTGAGCATAGTTCCGGCATTGGCCGGCGGCGATCTCTCTCCGAATCAAGGTTTTTATCTCAAAGTCTCTGATTCTTCTCATGCCACATATGTGTCACTCCCTGATGAACATGGTGAACTGATTCTTAGTGATAATATTCAATTGGGTCAGTTTATTCATATCGAACGCCTTGAGGCTGCTTCCCCTGTCCCCATTCTTCATGGAGTTCGACCTGTGCCTGGTCGACATCCTTGTGTGGGTACCCCTGAAGATATTGTTGCTACTCATTCTCCTGGGTTTCTTAATAATAATCCTAATCTGAAACCTATGGATAAATTGAAACCAACACCAAAAGTTGGCATTGGCGTTAGTGGGGAGAAGGAGAAATCTGTGGCTGAGAGGCTCAATGGCAATGCCAAGGAGGATAAAATTGAGAAGAGAGCCTCACCCTTGTGTAGATCCAAGTCTCAGTTGTCGTCGAAATTGACAGTGAATATAGATGTGAAGAAGAAGCCTTTGCGGTCGATGCCTTCATCTCCGACGAGCTGTTATTCGTTACCTTCTTCATTTGAGAAGTTTTCCAATAGCATTAAGCAGCAGGGGAAGGTTAAGCCATTGGCTAATGTAACAACCAAGGTAGGAGCGGTCGAGAAGAACTCGATTCGTTCAGCTAGTCCTGTTGCCAAGAAGATGGGAATGGGACATCAGATCCAACATTTAGTTCAGGGCATTGAGGTTGGAGCCAAGGGTCTGAGGAAGAGTTGGGAAGGGAACAACATGGAGACAAAAAGAAGAGACAATTCGATATTAAGAGCTAGCAAACTTGATGCCAAGCCCGAAGCTCGGGTTACTACTCCTAGAAGAAGTACATTGAGTGACAAGGTACCAGCAAAGTCATCTAAAGATGATTCTTCAAAGAAGAATGCTGCCAATGGAGCTCTAGATAATGAGAAAAGGTCGAATAGGAAAAAATCTTCGAATGGAAAGAAATCATCTTCAAGCGATGCAGTCAGGTTCCCCGGGAACTTGGTGAAGATTCCTCTTAGTCATAGAAGATTGACTGAAGGGAGTGTTTCATGGGCTTCACTTCCATCATCTCTTGCCAAGCTTGGAAAGGAAGTAATGAGGCACAGAGATGCTGCACAAACAGCAGCAATAGAGGCTATGCAAGAAGCTTCGGCGGCCGAGAGCTTACTACGATGTTTAAGTATATTTTCAGAGTTAAATACTGCTGCGAAGGAGCACAACCCACAGCCTGCGGTAGAACAGTTTCTGACCCTTCATGCTAGCCTAACCAATGCTCACATGGTAGCTGAATCACTTTCAAAAACTACTCCATCTGGTTCGAACAATGAGACCGAAGAAACCGCTTCGGAAGAAACAATGAAGGTCACATTAATGGCAAGAAGACAGGCATCTGCTTGGGTTCAGGCTGCTTTAGCTACCAACCTTTCATCTTTTGCAGTTTACAGCCGTGATCCACCCTCGACTCTAAACCCGACCTTATGTCTATCTCAAAACCAAAAGAATACATCTGCAAATCATCCTATAGTGGTTTTAGAAAACTCATCTAAGAACAGCTCGTCAAAATCCCAAGGGAAGATCCGCCAGATGATAAGCACTAAACCCGTTGGATCAGGAAATCCAAGTCGAACAAAGGAAGGAGCGACGACACTCGGTCAGAAGGTGCAGCCTCAACCTCCAGCAGAATGGATAAGAGGAAACGGGGTTGACGAAGCAGTTGACTTGGGTGAGACATTACGAGTGCAATCCCAGGACTGGTTCTTGAGATTCATGGAAAGGTTCTTGGATGCAGGTGTGGACACTGCAGCCTTGTCAGATAATGGACAAGTAGCAGGAATATTGACTCAGCTGAAGAGTGTAAACGACTGGTTAGATGGAATAGCTTGGTTTAGCAAGGATGAAGAAGACACAGCTCACATTCAAACCGAGACAATCGACAGGCTGAGGAAGAAGATCTACGAGTATCTTCTGATGCACGTCGAGTCTGCAGCCGCTGCACTGGGCGGGGGATCCCAGCCAGTGCCACAGCAGATCGAGGCAACCGAAACAAAAGCAAGAAGTTCAGGATTATACATACATTCAATTGTACATTCAGATAATTCTTTCTCAATCTCAACCTCAACCTCAACCTCAACCTCAAATCCTCTCTCTCGTCGACACATTTCCTTTGCACTAATTAATTCGCTCTGCAAACTCGGTGACAAAAGCCCAAAGGTGAATTTAGTCTCTGTTTCTTCGTTTTTGATTACAATGCCGCTTCCTCCCAAACTGAGCCGACCACTACTGCACAGGGACTCGGACGTTGCGGAGATGTCTTCCAACAGCTTATGGGTCGGAAACTTGTCCATGGATGTCACCGATGCGGATCTCATGAATTTGTTTGCGCAGTTTGGTGCCCTTGATAGTGTTACTTCCTATTCCTCCAGGAGCTTCGCTTTCATCTACTTCAAGCATATGGAGGATGCCCAAGCGGCTAAGGATGCTCTTCAGGGTTTTTTTCTGCGTGGGAGTTCTATCAAGATCGAGTTTGCGAGACCGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGTATTAGCCCAGCTGTTTCAAGGGAGCAACTTGAAGAGGAATTTTCCAAATTTGGTAAAATTGATGAATTTAAGTTTTTGCGAGATCGGAATACAGCATTTATTGAGTATGTTCGATTGGAAGATGCATCACAAGCTTTGAGAATTATGAATGGAAAACGCATTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGGTCACAGCCAATGAGAAGAGATCAGTGGCCTGACACCAGAGATGGGCATGGACAGCTTCAGGGTAGAAATGTGGGGATGGGTGATTTCCAATCTGGTTATAAAAGACCACTGCATGCTCAATCTTCGGAGTTGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTATCCTCCATCTGTTCAAATTGATGAGCAAATGCTCCACAATGCGATGATTTTATTTGGTGAGATAGACAGAATCACAAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCACGGCGTGCAAAGGAGGGTCTACAAGGACGGCTTTTTAATGATCCTCGGATTACTATTATGTTTTCAAACAGTGATCCGGCACCTGTGAAAGAGAACCTTGGCTTTTATCCTGGTGGTAAAGAGACTAGGCCTGATATGTTTTTCAATGAGCATCAAATCCGTCCTCCACAAATGGACCTGTTGGGACATCCTCACCCAATGGTGCAAAATAAGTTTCCTGGACCACTGCCATCTAGTGGCATTCTTGGACAAAATACGGCAGTAAGACCACCGCCCTTTGGTCCTCTGCAGGGTATCTCAGGCCCCCCAGAATTTAATGACTTGGTGACATCTCATAGTTTTCAGGATGCAAATTCAAAAAATATGATTGGTCCAAATTGGAGAAGGCAATCTCCTCCGACACCAGGGATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCGGTCAGGTCAACTCCAAGTACGTGGGATGCTTTGGATGTAAATCAATTCCATAGGGATTCTAAACGTTCAAGGATAGATGGTCCAACATCCTTAGATGATGCTGCTTTTCCTCCAAGAAAAATGGATAACCGGAGCATGGGTTTTGATCAGCAATATGGGGTTCGTCCAATAAGTGATGGAGGTTCTTCTCTTCCATATTCCAATGCTCCAGCAAAGACTCCTGCTATACCTATAGTTGCAAGGGCTCCAGTTAGTGGACGTGGCCAGAGCCATGCTGAAAATGATTTTGTATGGCGTGGAATAATTGCCAAGGGAGGAACGCCTGTTTGTCATGCTCGTTGTGTTCCAATAGGCGAAGGAATAGGAAGTGAGCTTCCTGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAGCTCACTAAACATTATGCTGAGGCCACTGGATTCGACATCGTCTTTTTCTTGCCAGATAGCGAGGATGATTTTGCATCCTATACCGAATTCCTGCGTTATCTAGGTGCAAAAGATCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTGGTTCCTCCTTCAGAGTTTTTGAGAAAAGTCTTGAAAGTTTCTGGTCCAGAACGGCTTTATGGTCTTGTTCTCAAATTTCCTCAGGTGTCTATTAGTGAACCTACTCACCAACAATCATATCTACCCATGCCTACATCTGACTATGGTGAGAGACAGCAGGTTTTGTCTTCACAAACTGAATATGGGTCAGTGCCTTCAAAGCAGGAGCAACTTCCGATGGATTATAATAGGGTTTTGCATGATGAAATTAAGGAGCCCCCAAAAACTCTTCTGCCCGCAAGTGAGCCATCAGCAGTTCAGCCCTTGCCTCAAGAATATGTTGCTAACAATAATACGGCTGCAATCTCACAAGCTGGGTTAACATTAACACCCGAGCTTATTGCTACCTTGGTTTCCTTACTGCCTGGTAAGTCACAGTCATCTAGTTTAGAAAGTGCCAAACAACCGGCAGCCTCACCACAACCTCCAGTTCCTCCTGTTGTTTCTAATAAAGGGGCTCCATCTGAGGGATGGATGGTAGGTCATCAATCTTCTGATCAAACCGGTCAGCCATTTCAGCAAATGGGAAATCATTATAATCCTCAGAGTCACAGCCTTTCTCAATTTCAACCTTATCCACCTCTCCCTCAGACACCTAACCAGCTTGCACCACAGGCCACGGGAACCACCCAAATCCAAGAAGCTTCTGTCAGTCTGCCACAGCAGCAGCAGCAGCAGCAGTTACCTATTCCTTACAGGCCTTTATCTACGTATTCTGCCCCTCCTGAAAATGCACAAGCTTCTGGTCTGCCCTTGGTCAATCCTCAGTATCATCATGATAATTCGCAAATTAGCCAGAGAGGTTATGGGTCGGTCAATGGAGTTGACACATCTGGCTATGGTGCACCAGTTATTCAGCAATCAGCAAATACTGTGACCTTATCTAATCAAGGTCAGGGTTCTACGATACAGTCACAACCTATTACTCAATTAGCATCTGATAGGGTGAATTCCGAGCCTCCTTATCAGATGCAGCATTTGCAATCTGCAAACCTTGGCACTGGCACTGGGAGTAGTGATGCTGAGGCAGGCAAGGACCAGAGATATCGATCTACACTCCAATTTGCTGCCAATTTACTCCTCCAGATTCAGCAGCAGCAGCAGCAGAAGCAAGCAGGCTGGGGTTCAGGAAATCAATAA 5376 45.35 MANLVPGVLLKLLQHMNTDVKVAGEHRSALLQVVSIVPALAGGDLSPNQGFYLKVSDSSHATYVSLPDEHGELILSDNIQLGQFIHIERLEAASPVPILHGVRPVPGRHPCVGTPEDIVATHSPGFLNNNPNLKPMDKLKPTPKVGIGVSGEKEKSVAERLNGNAKEDKIEKRASPLCRSKSQLSSKLTVNIDVKKKPLRSMPSSPTSCYSLPSSFEKFSNSIKQQGKVKPLANVTTKVGAVEKNSIRSASPVAKKMGMGHQIQHLVQGIEVGAKGLRKSWEGNNMETKRRDNSILRASKLDAKPEARVTTPRRSTLSDKVPAKSSKDDSSKKNAANGALDNEKRSNRKKSSNGKKSSSSDAVRFPGNLVKIPLSHRRLTEGSVSWASLPSSLAKLGKEVMRHRDAAQTAAIEAMQEASAAESLLRCLSIFSELNTAAKEHNPQPAVEQFLTLHASLTNAHMVAESLSKTTPSGSNNETEETASEETMKVTLMARRQASAWVQAALATNLSSFAVYSRDPPSTLNPTLCLSQNQKNTSANHPIVVLENSSKNSSSKSQGKIRQMISTKPVGSGNPSRTKEGATTLGQKVQPQPPAEWIRGNGVDEAVDLGETLRVQSQDWFLRFMERFLDAGVDTAALSDNGQVAGILTQLKSVNDWLDGIAWFSKDEEDTAHIQTETIDRLRKKIYEYLLMHVESAAAALGGGSQPVPQQIEATETKARSSGLYIHSIVHSDNSFSISTSTSTSTSNPLSRRHISFALINSLCKLGDKSPKVNLVSVSSFLITMPLPPKLSRPLLHRDSDVAEMSSNSLWVGNLSMDVTDADLMNLFAQFGALDSVTSYSSRSFAFIYFKHMEDAQAAKDALQGFFLRGSSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDEFKFLRDRNTAFIEYVRLEDASQALRIMNGKRIGGDQIRVDFLRSQPMRRDQWPDTRDGHGQLQGRNVGMGDFQSGYKRPLHAQSSELRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIDRITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPAPVKENLGFYPGGKETRPDMFFNEHQIRPPQMDLLGHPHPMVQNKFPGPLPSSGILGQNTAVRPPPFGPLQGISGPPEFNDLVTSHSFQDANSKNMIGPNWRRQSPPTPGILSSPATGIRPPPPVRSTPSTWDALDVNQFHRDSKRSRIDGPTSLDDAAFPPRKMDNRSMGFDQQYGVRPISDGGSSLPYSNAPAKTPAIPIVARAPVSGRGQSHAENDFVWRGIIAKGGTPVCHARCVPIGEGIGSELPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKDRAGVAKFDDGTTMFLVPPSEFLRKVLKVSGPERLYGLVLKFPQVSISEPTHQQSYLPMPTSDYGERQQVLSSQTEYGSVPSKQEQLPMDYNRVLHDEIKEPPKTLLPASEPSAVQPLPQEYVANNNTAAISQAGLTLTPELIATLVSLLPGKSQSSSLESAKQPAASPQPPVPPVVSNKGAPSEGWMVGHQSSDQTGQPFQQMGNHYNPQSHSLSQFQPYPPLPQTPNQLAPQATGTTQIQEASVSLPQQQQQQQLPIPYRPLSTYSAPPENAQASGLPLVNPQYHHDNSQISQRGYGSVNGVDTSGYGAPVIQQSANTVTLSNQGQGSTIQSQPITQLASDRVNSEPPYQMQHLQSANLGTGTGSSDAEAGKDQRYRSTLQFAANLLLQIQQQQQQKQAGWGSGNQ 1791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5153865 5172649 - CmaCh17G006090.1 Cma17g00609 312504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00609 1791 CDD RRM3_Spen 1010 1080 - -
Cma17g00609 1791 MobiDBLite consensus disorder prediction 1539 1602 - -
Cma17g00609 1791 MobiDBLite consensus disorder prediction 547 599 - -
Cma17g00609 1791 MobiDBLite consensus disorder prediction 1227 1252 - -
Cma17g00609 1791 SUPERFAMILY RNA-binding domain, RBD 882 980 IPR035979 GO:0003676
Cma17g00609 1791 MobiDBLite consensus disorder prediction 1572 1602 - -
Cma17g00609 1791 MobiDBLite consensus disorder prediction 547 590 - -
Cma17g00609 1791 MobiDBLite consensus disorder prediction 123 158 - -
Cma17g00609 1791 CDD RRM3_Spen 887 956 - -
Cma17g00609 1791 SUPERFAMILY RNA-binding domain, RBD 800 882 IPR035979 GO:0003676
Cma17g00609 1791 CDD RRM3_Spen 810 879 - -
Cma17g00609 1791 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 885 957 IPR000504 GO:0003723
Cma17g00609 1791 Pfam SPOC domain 1297 1416 IPR012921 -
Cma17g00609 1791 Pfam Plant protein of unknown function (DUF936) 4 701 IPR010341 -
Cma17g00609 1791 SMART rrm1_1 809 876 IPR000504 GO:0003723
Cma17g00609 1791 SMART rrm1_1 1009 1077 IPR000504 GO:0003723
Cma17g00609 1791 SMART rrm1_1 886 953 IPR000504 GO:0003723
Cma17g00609 1791 Gene3D - 996 1088 IPR012677 -
Cma17g00609 1791 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 808 880 IPR000504 GO:0003723
Cma17g00609 1791 SUPERFAMILY RNA-binding domain, RBD 1003 1087 IPR035979 GO:0003676
Cma17g00609 1791 Gene3D - 882 995 IPR012677 -
Cma17g00609 1791 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 794 1791 - -
Cma17g00609 1791 PANTHER RNA RECOGNITION MOTIF-CONTAINING 794 1791 - -
Cma17g00609 1791 MobiDBLite consensus disorder prediction 282 309 - -
Cma17g00609 1791 MobiDBLite consensus disorder prediction 281 364 - -
Cma17g00609 1791 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1008 1081 IPR000504 GO:0003723
Cma17g00609 1791 Gene3D - 797 881 IPR012677 -
Cma17g00609 1791 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1020 1074 IPR000504 GO:0003723
Cma17g00609 1791 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 810 874 IPR000504 GO:0003723
Cma17g00609 1791 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 887 951 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00609 - - - cmos:111456063 2017.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00317 Cma-Chr2:1513519 Cma17g00609 Cma-Chr17:5153865 8.48E-06 dispersed
Cma05g00959 Cma-Chr5:7757667 Cma17g00609 Cma-Chr17:5153865 2.48E-07 dispersed
Cma12g00004 Cma-Chr12:17655 Cma17g00609 Cma-Chr17:5153865 1.18E-12 dispersed
Cma17g00609 Cma-Chr17:5153865 Cma20g00699 Cma-Chr20:3216684 3.68E-14 dispersed
Cma11g00592 Cma-Chr11:2831147 Cma17g00609 Cma-Chr17:5153865 2.89E-28 transposed
Cma17g00609 Cma-Chr17:5153865 Cma08g00192 Cma-Chr8:1079463 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1277 . . . . . Bpe14g01063 . . . Cmo17g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00449 . Bda11g00478 Bda13g00251 . . Bma02g00967 . . . . . Cma17g00609 Car08g00175 Car17g00576 . Cpe17g01086 . . . . . . . . . . . . . . . . . Cme11g02453
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00609 Cma_Chr17 FPKM 7.988286 9.115579 9.487509 8.881823 15.341679 15.401051 15.168523 7.611127 6.938126 6.448438