Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00620 | ATGCGGATGGGCTTGCATTTCCTTTACATTGCCCCATTTCGAGGCACGTTTGGTTTGAATTACCACACTTCATCTTATTTACTGGAGAACAAAGTGAATGGAAGTAGCTTTCAAGTAGATTTGAAGTTAGGAATTTCCAAAATTCAGCGACCAGGATCAGGGGGCGATTTGCCCCAGGGTGGCGAGTTCAACCCTTATCCTATTGCACGGAGGGTAAATTCCTCTCATACCGTGGTCATGGATGATGACATTGAGAGTGCTAGTTTGGGGGTATACCAAGACAGACAAAGGACTTTCCCCGACATGCGTAGTAAAGTCAACACCCCATTGATATTTCGAATTTTGATGGGGATAAATATTCGTGTTCTCTTAGTACTTCTTCTGTTCGCATTTGGATTAATATTCTACGTTGGAGCAAGAACTTCCCCTATTATTGTGTTTGTCTTCTCGGTTTGCATTGTCAGCTTCTGCTTTTCAATATATCTCACCAAATGGGTGCTCTCGAAAGATGAAGGGCCACCGGAGATGGCTCAGATTTCAGAAGCAATACGTGATGGGGCAGAAGGTTTCTTTAGGACGCAGTATAGTACCATCTCTAAAATGGCTATGTTACTTGCAGTAGTGATTCTTTGCATATACTTGTTTCGTAGTACTACTCCTCAACAAGAATCTTCTGGAATAGGGAGGTCAACAACTGCCTATATTACTGTTGCAGCATTTCTGTTAGGAGCCTTGTGCTCAGGTATTGCAGGGTATGTTGGAATGTGGGTTTCAGTTCGTGCGAATGTCAGGGTCTCTAGTGCTGCCAGACGGTCTGCAAGGGAGGCATTGCAGATTGCTGTTCGGGCTGGTGGTTTTTCTGCCATAGTTGTTGTTGGCATGGCTGTTATTGGTATAGCCATCCTGTATGCTTCCTTTCATGTTTGGTTGGATGTGGGTTCGCCAGGTTCAACCAAGGTTACCGACTTGCCTCTTCTCCTTGTGGGTTATGGTTTTGGGGCTTCTTTCGTTGCCCTATTTGCTCAGTTGGGTGGTGGTATCTATACTAAAGCTGCTGATGTTGGAGCAGACCTTGTTGGAAAGGTTGAGCAGGGGATACCAGAAGATGATCCTAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGACAATGTGGGTGATTGTGCCGCCCGAGGTGCAGATCTTTTTGAAAGCATTGCTGCTGAAATCATTAGTGCCATGATACTTGGGGGAACAATGGCTCAACGCTGTAAAATTGAAGATCCATCTGGTTTCATTTTATTTCCGCTGGTAGTACACTCCTTTGATCTGGTGATTTCATCAATTGGAATTCTCTCTATCCGGAGGGGTACTCGTGAATCTGGTGTGAAGAGTCCGGTAGAGGATCCAATGACTATTCTGCAGAGAGGATATTCTGTCACTATTGTTTTGGCTGTTATAACATTTGGCGTGTCTACTCGGTGGTTGCTTCATACTGAACAAGCACCTTCTGCATGGTTCAACTTTGCCTTGTGTGGATTGGTTGGTATTATAACGGCTTACATTTTTGTTTGGATCACCAAATACTACACTGACTACAAGCATGAGCCTGTGCGTTCATTAGCACTTTCTAGCTCCACAGGCCATGGGACAAACATAATTGCTGGAGTCAGCTTGGGCCTGGAATCAACAGCACTTCCCGTTCTTGTTATTAGTGTTTCTATTGTTTCAGCTTTCTGGTTGGGTCGCACATCAGGACTTGTGGACGAAGATGGAAATCCAACAGGTGGGCTATTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAAATGAGTCAGCAGCCAGAAAGCGTTCGGGAGATTACTGATCTTCTTGATGCAGTAGGTAATACAACTAAAGCTACCACAAAAGGTTTTGCCATTGGCTCTGCAGCCCTTGCATCCTTCCTACTTTTTAGTGCTTATATGGATGAGGTAGCTACATTTGCTCATGAACCTTTTAACCAGGTAGATATTGCAATTCCAGAAGTTTTCGTTGGTGGTTTGTTGGGTTCCATGCTTATTTATCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTTGTAAAGGAAGTTAGAAAACAGTTCCTTGAGAGGCCTGGTATAATGGACTATACGGAGAAACCAGAATATGGACGTTGCGTTGCTATTGTAGCATCAGCATCTCTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATCATTTCTCCCATGGCAGTTGGCTTCCTGTTCAGAATATTGGGACACTACACCGGGCAACCGCTTCTAGGGGCCAAGGTCGTTGCTGCGATGCTGATGTTTGCAACAGTTTCCGGTATTCTCATGGCCCTTTTTCTTAACACAGCAGGGGGTGCCTGGGACAACGCCAAGAAGTATATAGAGACTGGGGTTCTTGGAGGCAAAGGTAGCGATAGTCATAAAGCAGCCGTAACCGGGGACACCGTTGGTGACCCATTCAAGGACACAGCTGGGCCTTCCCTTCACGTTCTGATAAAAATGCTCGCAACCATAACGCTGGTGATGGCCCCGATCTTTCTGTAA | 2643 | 45.44 | MRMGLHFLYIAPFRGTFGLNYHTSSYLLENKVNGSSFQVDLKLGISKIQRPGSGGDLPQGGEFNPYPIARRVNSSHTVVMDDDIESASLGVYQDRQRTFPDMRSKVNTPLIFRILMGINIRVLLVLLLFAFGLIFYVGARTSPIIVFVFSVCIVSFCFSIYLTKWVLSKDEGPPEMAQISEAIRDGAEGFFRTQYSTISKMAMLLAVVILCIYLFRSTTPQQESSGIGRSTTAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYASFHVWLDVGSPGSTKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAQRCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGTRESGVKSPVEDPMTILQRGYSVTIVLAVITFGVSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGRTSGLVDEDGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVATFAHEPFNQVDIAIPEVFVGGLLGSMLIYLFSAWACSAVGRTAQEVVKEVRKQFLERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMAVGFLFRILGHYTGQPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDSHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMAPIFL | 880 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 5283051 | 5294227 | + | CmaCh17G006200.1 | Cma17g00620 | 312515 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00620 | 880 | TIGRFAM | V_PPase: V-type H(+)-translocating pyrophosphatase | 147 | 879 | IPR004131 | GO:0004427|GO:0009678|GO:0016020|GO:1902600 | |
Cma17g00620 | 880 | Hamap | Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. | 142 | 880 | IPR004131 | GO:0004427|GO:0009678|GO:0016020|GO:1902600 | |
Cma17g00620 | 880 | PANTHER | INORGANIC DIPHOSPHATASE-RELATED | 97 | 880 | - | - | |
Cma17g00620 | 880 | PIRSF | H+-PPtase | 139 | 880 | IPR004131 | GO:0004427|GO:0009678|GO:0016020|GO:1902600 | |
Cma17g00620 | 880 | Pfam | Inorganic H+ pyrophosphatase | 154 | 875 | IPR004131 | GO:0004427|GO:0009678|GO:0016020|GO:1902600 | |
Cma17g00620 | 880 | PANTHER | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP | 97 | 880 | IPR004131 | GO:0004427|GO:0009678|GO:0016020|GO:1902600 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g01035 | Cma-Chr12:8211478 | Cma17g00620 | Cma-Chr17:5283051 | 3.40E-148 | dispersed | |
Cma17g00620 | Cma-Chr17:5283051 | Cma11g00511 | Cma-Chr11:2413130 | 4.04E-152 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00620 | K23025 | - | csv:101217198 | 1447.57 |