Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00631 ATGCCGTCCGTTTATGGAGATCGTTTGACTACCTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGCAAGGTATCTGGACCAGTCGTCGTGGCCGATGGAATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATTTGATTGGTGAAATCATTAGATTAGAAGGAGATTCTGCCACAATTCAGGTTTACGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCATAAACCTCTGTCAGTGGAGTTAGGGCCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGAGATGTCTACATTCCTCGTGGTGTTGCTGTCCCAGCACTTGACAAAGACATACTTTGGGACTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTAACAGGTGGAGACTTATATGCTACTGTCTTTGAGAATAGTCTAATGGAGCATCGCATTGCACTTCCTCCTGATTCTATGGGGAAAATTACCTATATTGCACCAGCTGGTCAATATTCATTGAAGGATACTGTTTTAGAGCTTGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGAATTGGCCTGTCCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACTGGGCAGCGTGTTCTTGATGCACTCTTCCCTTCTGTTCTTGGTGGAACATGTGCCATTCCAGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATACTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAACGAAATGGCTGAAGTTCTTATGGACTTTCCTCAATTGACAATGACACTGCCCGACGGTCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCTGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCTACATCTCGATGGGCAGAAGCACTACGTGAAATATCTGGACGACTGGCAGAAATGCCAGCAGATAGTGGATATCCTGCATATCTAGCAGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAATGTCTTGGTGGGCCAGAACGGACTGGTAGTGTTACCATTGTCGGTGCAGTTTCTCCACCTGGAGGAGATTTCTCAGATCCAGTGACATCTGCCACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCTCAGAGGAAGCACTTCCCTTCCGTGAACTGGCTAATTTCATACTCAAAATACTCTACTGCGTTGGAATCTTTCTACGAGAAGTTTGATCCAGATTTTATTAACATCAGGACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGGAAGGATGCCTTGGCCGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTACGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGCAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGACGGCCAAAGGATAACATACACTTTGATTAAGCATCGGTTGGGAGATCTGTTCTACCGCCTGGTGTCTCAAAAGTTCGAGGATCCAGCTGAAGGAGAAGAAGCTCTGGTTGAGAAGTTCAAGAAGCTGCATGAAGATCTGACAAATGGGTTCCGTGCTCTGGAGGATGAAACTCGGTAG 1872 44.66 MPSVYGDRLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLLTGGDLYATVFENSLMEHRIALPPDSMGKITYIAPAGQYSLKDTVLELEFQGVKKQFTMLQNWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQRITYTLIKHRLGDLFYRLVSQKFEDPAEGEEALVEKFKKLHEDLTNGFRALEDETR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5362734 5368240 + CmaCh17G006310.1 Cma17g00631 312526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00631 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034|GO:0046961
Cma17g00631 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Cma17g00631 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Cma17g00631 623 Gene3D - 20 89 IPR023366 -
Cma17g00631 623 Coils Coil 601 621 - -
Cma17g00631 623 Gene3D - 459 612 IPR024034 -
Cma17g00631 623 Gene3D - 91 457 IPR027417 -
Cma17g00631 623 Gene3D - 134 205 - -
Cma17g00631 623 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 611 IPR005725 GO:0033180|GO:0046961|GO:1902600
Cma17g00631 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
Cma17g00631 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 - -
Cma17g00631 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Cma17g00631 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Cma17g00631 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Cma17g00631 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Cma17g00631 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Cma17g00631 623 CDD V_A-ATPase_A 88 460 - -
Cma17g00631 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Cma17g00631 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 IPR022878 GO:0046034|GO:0046961
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00631 Cma-Chr17:5362734 Cma18g00985 Cma-Chr18:8308881 3.47E-26 dispersed
Cma17g00631 Cma-Chr17:5362734 Cma08g00852 Cma-Chr8:5173893 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00631 K02145 - csv:101216234 1210.28