Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00633 | ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCTGTGCAAGAGCAGGAACATCATGACTTTCATTACACGAGTAATGGGAATGCATTGGCTGATGAGCATGAAAATGAAGGTCATGGCATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGCGACCTTGCTGAGAATCGTGGTGTAATGGTGGATCGTGGAGGTGATAACTGTGATCAACTCACCCTGTCTTATCAGGGACAAGTTTATGTTTTCGACACTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTATTCGTGTTCCCTCTATACCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCGTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAACGGAATAAAGGCCAGTTCACATCCTCTAAACCAACTCATGAAGATTCATCATTGGCCATAACAAGTTGGGAATCAAATGAGAATTGGGCTACCGATGGAAATGGTTCCCAACAACAAGAAATTCTCTGCCGACATTGTGGCATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGAGTGGACAAGCTTCATCATTCAATAGAAATGAGATTCGGAGTCCAACCCAAAAGGTGCTTAGAATTGAGACAGATGTTTATGATTGCTGTTGCGGAAATTATACTGAGCTTAATCTCTCCTTACAGAGTAGTTTGAAACGGGTTAGTCTGATGGCTAAGAATCAGGATTCACACCCGCGACAGAGAGACCCTTATAGATTCTATTCTGGCCAATTCATCTTGGAAACAAGGGTACCGTGCACGTGCACTAATTTTATTAGCTTTTCCTATCATATTCTGAACCATTTTCCAAATGTCAATTCCCAGAATCTTGTAAATTATCATTTGCTGCTGATGATGTACAATGGACGGTTTTTTCTTAATCCATCTTACTTTTGTCCAGTATTCTCTTGCACAGGTAAAATGGATGTAAACATTTTCTACACTGTTATATGTTCTGGTTTACATCCATTTGCTAACCATCATGAAACTTGA | 1305 | 42.53 | MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDFHYTSNGNALADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDTVSPEKVQAVLLLLGGREVPIRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPTHEDSSLAITSWESNENWATDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQSGQASSFNRNEIRSPTQKVLRIETDVYDCCCGNYTELNLSLQSSLKRVSLMAKNQDSHPRQRDPYRFYSGQFILETRVPCTCTNFISFSYHILNHFPNVNSQNLVNYHLLLMMYNGRFFLNPSYFCPVFSCTGKMDVNIFYTVICSGLHPFANHHET | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 5374354 | 5379744 | - | CmaCh17G006330.1 | Cma17g00633 | 312528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00633 | 434 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 278 | - | - | |
Cma17g00633 | 434 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 4 | 288 | - | - | |
Cma17g00633 | 434 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Cma17g00633 | 434 | ProSiteProfiles | CCT domain profile. | 155 | 197 | IPR010402 | GO:0005515 | |
Cma17g00633 | 434 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 4 | 288 | IPR045280 | GO:0006355 | |
Cma17g00633 | 434 | SMART | GATA_3 | 225 | 278 | IPR000679 | GO:0006355|GO:0043565 | |
Cma17g00633 | 434 | Pfam | GATA zinc finger | 231 | 267 | IPR000679 | GO:0006355|GO:0043565 | |
Cma17g00633 | 434 | Gene3D | - | 221 | 288 | IPR013088 | GO:0006355|GO:0008270 | |
Cma17g00633 | 434 | SMART | tify_2 | 78 | 113 | IPR010399 | - | |
Cma17g00633 | 434 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 258 | IPR000679 | GO:0006355|GO:0043565 | |
Cma17g00633 | 434 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Cma17g00633 | 434 | CDD | ZnF_GATA | 231 | 273 | IPR000679 | GO:0006355|GO:0043565 | |
Cma17g00633 | 434 | Pfam | CCT motif | 155 | 197 | IPR010402 | GO:0005515 | |
Cma17g00633 | 434 | ProSiteProfiles | GATA-type zinc finger domain profile. | 225 | 286 | IPR000679 | GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma08g00850 | Cma17g00633 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00535 | Cma-Chr5:2594145 | Cma17g00633 | Cma-Chr17:5374354 | 5.62E-67 | dispersed | |
Cma11g01674 | Cma-Chr11:11008593 | Cma17g00633 | Cma-Chr17:5374354 | 8.63E-70 | dispersed | |
Cma17g00633 | Cma-Chr17:5374354 | Cma19g00483 | Cma-Chr19:5772608 | 7.53E-68 | dispersed | |
Cma17g00633 | Cma-Chr17:5374354 | Cma08g00850 | Cma-Chr8:5167220 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36662 | PF06203 | CCT | 1.40E-14 | CL0281 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00633 | - | - | cmo:103500623 | 551.592 |