Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00633 ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCTGTGCAAGAGCAGGAACATCATGACTTTCATTACACGAGTAATGGGAATGCATTGGCTGATGAGCATGAAAATGAAGGTCATGGCATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGCGACCTTGCTGAGAATCGTGGTGTAATGGTGGATCGTGGAGGTGATAACTGTGATCAACTCACCCTGTCTTATCAGGGACAAGTTTATGTTTTCGACACTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTATTCGTGTTCCCTCTATACCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCGTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAACGGAATAAAGGCCAGTTCACATCCTCTAAACCAACTCATGAAGATTCATCATTGGCCATAACAAGTTGGGAATCAAATGAGAATTGGGCTACCGATGGAAATGGTTCCCAACAACAAGAAATTCTCTGCCGACATTGTGGCATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGAGTGGACAAGCTTCATCATTCAATAGAAATGAGATTCGGAGTCCAACCCAAAAGGTGCTTAGAATTGAGACAGATGTTTATGATTGCTGTTGCGGAAATTATACTGAGCTTAATCTCTCCTTACAGAGTAGTTTGAAACGGGTTAGTCTGATGGCTAAGAATCAGGATTCACACCCGCGACAGAGAGACCCTTATAGATTCTATTCTGGCCAATTCATCTTGGAAACAAGGGTACCGTGCACGTGCACTAATTTTATTAGCTTTTCCTATCATATTCTGAACCATTTTCCAAATGTCAATTCCCAGAATCTTGTAAATTATCATTTGCTGCTGATGATGTACAATGGACGGTTTTTTCTTAATCCATCTTACTTTTGTCCAGTATTCTCTTGCACAGGTAAAATGGATGTAAACATTTTCTACACTGTTATATGTTCTGGTTTACATCCATTTGCTAACCATCATGAAACTTGA 1305 42.53 MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDFHYTSNGNALADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDTVSPEKVQAVLLLLGGREVPIRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPTHEDSSLAITSWESNENWATDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQSGQASSFNRNEIRSPTQKVLRIETDVYDCCCGNYTELNLSLQSSLKRVSLMAKNQDSHPRQRDPYRFYSGQFILETRVPCTCTNFISFSYHILNHFPNVNSQNLVNYHLLLMMYNGRFFLNPSYFCPVFSCTGKMDVNIFYTVICSGLHPFANHHET 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5374354 5379744 - CmaCh17G006330.1 Cma17g00633 312528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00633 434 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 278 - -
Cma17g00633 434 PANTHER GATA TRANSCRIPTION FACTOR 28 4 288 - -
Cma17g00633 434 Pfam tify domain 84 112 IPR010399 -
Cma17g00633 434 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Cma17g00633 434 PANTHER GATA TRANSCRIPTION FACTOR 28 4 288 IPR045280 GO:0006355
Cma17g00633 434 SMART GATA_3 225 278 IPR000679 GO:0006355|GO:0043565
Cma17g00633 434 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355|GO:0043565
Cma17g00633 434 Gene3D - 221 288 IPR013088 GO:0006355|GO:0008270
Cma17g00633 434 SMART tify_2 78 113 IPR010399 -
Cma17g00633 434 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Cma17g00633 434 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cma17g00633 434 CDD ZnF_GATA 231 273 IPR000679 GO:0006355|GO:0043565
Cma17g00633 434 Pfam CCT motif 155 197 IPR010402 GO:0005515
Cma17g00633 434 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00850 Cma17g00633 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00535 Cma-Chr5:2594145 Cma17g00633 Cma-Chr17:5374354 5.62E-67 dispersed
Cma11g01674 Cma-Chr11:11008593 Cma17g00633 Cma-Chr17:5374354 8.63E-70 dispersed
Cma17g00633 Cma-Chr17:5374354 Cma19g00483 Cma-Chr19:5772608 7.53E-68 dispersed
Cma17g00633 Cma-Chr17:5374354 Cma08g00850 Cma-Chr8:5167220 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36662 PF06203 CCT 1.40E-14 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00633 - - cmo:103500623 551.592