Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00644 ATGAATTGGAGGTGGAGGGAGCTGATATCTCTCATCCTTCTTTGCATTCTAGGATGGAAGCCTAGCTCCATTCAAGGAGCCACAGATCCAACAGATGCCTCTGCTTTAAGAGTTTTGTACTCCAGCTTAAACTCGCCGTCTCAGTTAACCAAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGGATTACTTGTTCTGGCACACGGGTTACGGAAATAAACTTATCTGGCCTTGGGCTCAGTGGATCGCTCGGGTACCAGCTTGCAAGTATGGCATCGGTAACCAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCTAACCTGAAAAGACTAAATCTTGCTAGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATTACTTCTCTTCAATACTTGAATATCAGTCACAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATTCACATTGGATCTGTCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTGGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAACCGTTTCACTGGCTGGATCCCTAATCAACTGAAGAACATTAATCTGCGGAAAGATGGCAACTCCTGGAGCTCAGGTCCTGCACCCCCTCCCCCACCTGGTACACCCCCAGCCACCAGAAGGAACCGGAGTCACAGTTCTGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGATTAGGTGGTGGTGCTATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCGGTAGTAGCATTCTTCATCGTCAAGAGGAGATCGAAGAGATCATCTTCAGACATTGAAAGGCTTGATAATCAACCCCTGCAACCTCTTAAAATGACTGCAACACAAGAAATGAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACAGCATTTGACACTTCTGCTGCAATTAATCTCAAACCCCCACCTATCGATCGTCATAAATCGTTTGATGAAGATGACTTCTCAAAACGAGCACCAGTCGTCAAGAAGGCCAGTGCAGCTCCTATTAATGTAAAGGCATATTCAATAGCAGACCTGCAAATGGCTACAGGTAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTATATCGGGCTGAGTTTGATAACGGAAAGGTTCTTGCGGTGAAAAAGATAAACTCGTCTGCATTACCGAGGGAATTAGCTGAAGATTTCACTGACATTGTTTCTCAAGTCTCCCAGTTACACCATCCCAATATAACCGAGCTGGTGGGTTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTACGACTTCTTGCATCTATCAGATGAATACAACAGACCTCTAATATGGAATTCCCGCATTAAGATTGCCTTGGGAACAGCGCGCGCATTAGAGTATCTTCATGAAGTATGCTCCCCGTCAATTGTTCATAGAAACATCAAGTCCGCTAACATATTGCTGGATGCCGAATTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCTTTGTACCTAATGCAGATCAGGCACTGGATGACGATGCAAGTTCAGGATACACTGCCCCCGAGGTCGCCATGTCCGGCCAATATACTTTGAAAAGCGACGTCTACAGTTTTGGTGTGGTCATGCTGGAACTCCTGACTGGACGCAAACCGTTCGATAGTTCAAGGTCGAGGATGGAGCAATCTTTGGTTCGATGGGCTACACCACAGCTTCATGACATTGATGCTTTAACGAAGATGGTAGATCCCGAGCTCAAAGGGCTATATCCAGTTAAATCTCTCTCCCGATTTGCAGACGTGATTGCGCTTTGCGTCCAGACTGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTGGAAGCGTTGGTTCGTCTGGTACAGCGAGCTAACATGAGTAAGAGAACAGTTGGGAACGATAATGCAACATCTCCCAGGGGAGGAGAGATGGGTGGAGAGGACACACCATAG 2145 45.64 MNWRWRELISLILLCILGWKPSSIQGATDPTDASALRVLYSSLNSPSQLTKWNANGDDPCGQSWKGITCSGTRVTEINLSGLGLSGSLGYQLASMASVTNLDVSNNNIGGEIVYQLPPNLKRLNLARNNFNKGIPYSISLITSLQYLNISHNQLQNPLIDMFGQLTSLFTLDLSFNAMSGNLPQSFSSLSGISTMNLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPNQLKNINLRKDGNSWSSGPAPPPPPGTPPATRRNRSHSSGGSPSNGGSSEGQKSGLGGGAIAGIIISVLVVGAVVAFFIVKRRSKRSSSDIERLDNQPLQPLKMTATQEMKSEETSSTFYPTAFDTSAAINLKPPPIDRHKSFDEDDFSKRAPVVKKASAAPINVKAYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDNGKVLAVKKINSSALPRELAEDFTDIVSQVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNRPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAEFSPHLSDSGLESFVPNADQALDDDASSGYTAPEVAMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTVGNDNATSPRGGEMGGEDTP 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5444729 5450883 + CmaCh17G006440.1 Cma17g00644 312539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00644 714 Gene3D Transferase(Phosphotransferase) domain 1 488 703 - -
Cma17g00644 714 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00644 714 Gene3D Ribonuclease Inhibitor 30 174 IPR032675 -
Cma17g00644 714 MobiDBLite consensus disorder prediction 260 281 - -
Cma17g00644 714 MobiDBLite consensus disorder prediction 692 714 - -
Cma17g00644 714 CDD STKc_IRAK 415 684 - -
Cma17g00644 714 Gene3D Phosphorylase Kinase; domain 1 374 486 - -
Cma17g00644 714 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515
Cma17g00644 714 Pfam Leucine Rich repeat 97 114 IPR001611 GO:0005515
Cma17g00644 714 Gene3D Ribonuclease Inhibitor 175 246 IPR032675 -
Cma17g00644 714 PANTHER OS01G0253100 PROTEIN 19 708 IPR045271 GO:0004714|GO:0006468
Cma17g00644 714 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672|GO:0006468
Cma17g00644 714 SUPERFAMILY L domain-like 28 234 - -
Cma17g00644 714 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 708 - -
Cma17g00644 714 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Cma17g00644 714 MobiDBLite consensus disorder prediction 238 283 - -
Cma17g00644 714 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cma17g00644 714 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00644 - - - csv:101213107 1200.27
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00022 Cma17g00644 CCT
Cma08g00837 Cma17g00644 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01427 Cma-Chr15:9019149 Cma17g00644 Cma-Chr17:5444729 0 dispersed
Cma17g00644 Cma-Chr17:5444729 Cma18g00568 Cma-Chr18:3822270 0 dispersed
Cma01g00022 Cma-Chr1:86530 Cma17g00644 Cma-Chr17:5444729 0 wgd
Cma14g01226 Cma-Chr14:9734658 Cma17g00644 Cma-Chr17:5444729 0 wgd
Cma17g00644 Cma-Chr17:5444729 Cma08g00837 Cma-Chr8:5074451 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
Vvi9g912 . Blo06g00642 . . . . Bma10g00705 Bma13g00656 Cmo08g00578 Cmo17g00626 . . . . . Cpe12g00545 Cpe17g00420 . . . . . . . . . . . . . . . . . . Lsi02g02849 Csa07g02298 . Cme01g02547 . Blo10g00501 . Bda12g00560 . Bpe09g00456 . . Sed14g0708 . . . Cma17g00644 . Car17g00606 . . Bhi09g00536 Tan06g0478 Cmetu08g0001 . Hepe03g1671 . . . . . . . . . . . Chy01g02120 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma18g00568 . 383 676 Strubbelig Receptor Gene Family AT1G11130 54.1 7.4e-86 315.8
Cma13g00416 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.8e-85 313.2
Cma17g00644 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.0e-83 307.8
Cma08g00837 CCT,CST 429 717 Strubbelig Receptor Gene Family AT1G11130 52.9 4.5e-83 306.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma14g01226 . 1 718 Strubbelig Receptor Gene Family AT1G53730 60.1 1.2e-211 733.8
Cma01g00022 CCT 526 1249 Strubbelig Receptor Gene Family AT1G53730 60.6 5.0e-210 728.4
Cma08g00837 CCT,CST 31 730 Strubbelig Receptor Gene Family AT1G53730 59.1 1.6e-179 627.1
Cma17g00644 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.7 1.5e-177 620.5
Cma13g00416 . 4 689 Strubbelig Receptor Gene Family AT1G53730 51.6 6.9e-135 478.8
Cma11g01861 CST 518 810 Strubbelig Receptor Gene Family AT1G53730 56.3 2.9e-88 323.9
Cma14g01226 . 11 713 Strubbelig Receptor Gene Family AT3G14350 51.8 1.8e-180 630.2
Cma01g00022 CCT 536 1253 Strubbelig Receptor Gene Family AT3G14350 50.6 7.5e-179 624.8
Cma08g00837 CCT,CST 39 728 Strubbelig Receptor Gene Family AT3G14350 53.5 7.0e-161 565.1
Cma17g00644 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 53.0 1.4e-156 550.8
Cma11g01861 CST 517 818 Strubbelig Receptor Gene Family AT3G14350 51.6 1.8e-76 284.6
Cma18g00568 . 332 706 Strubbelig Receptor Gene Family AT4G22130 81.6 2.2e-173 606.3
Cma13g00416 . 344 711 Strubbelig Receptor Gene Family AT4G22130 80.2 4.4e-169 592.0
Cma14g01226 . 402 725 Strubbelig Receptor Gene Family AT4G22130 63.2 2.1e-118 423.7
Cma01g00022 CCT 943 1265 Strubbelig Receptor Gene Family AT4G22130 63.4 4.6e-118 422.5
Cma17g00644 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.9 6.0e-118 422.2
Cma08g00837 CCT,CST 423 732 Strubbelig Receptor Gene Family AT4G22130 66.0 3.9e-117 419.5
Cma11g01861 CST 486 821 Strubbelig Receptor Gene Family AT4G22130 55.6 4.8e-107 386.0
Cma19g00972 CST 459 754 Strubbelig Receptor Gene Family AT4G22130 60.9 1.5e-105 380.9
Cma04g00965 . 378 695 Strubbelig Receptor Gene Family AT4G22130 55.4 4.3e-100 362.8
Cma03g00479 . 485 771 Strubbelig Receptor Gene Family AT4G22130 60.5 1.4e-98 357.8
Cma14g00431 . 404 726 Strubbelig Receptor Gene Family AT4G22130 52.0 2.5e-92 337.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69236 PF07714 PK_Tyr_Ser-Thr 2.10E-43 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00644 Cma_Chr17 FPKM 60.33131 67.456039 25.672504 25.089315 24.447058 24.559824 22.623074 16.348324 16.823425 17.385506