Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00644 | ATGAATTGGAGGTGGAGGGAGCTGATATCTCTCATCCTTCTTTGCATTCTAGGATGGAAGCCTAGCTCCATTCAAGGAGCCACAGATCCAACAGATGCCTCTGCTTTAAGAGTTTTGTACTCCAGCTTAAACTCGCCGTCTCAGTTAACCAAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGGATTACTTGTTCTGGCACACGGGTTACGGAAATAAACTTATCTGGCCTTGGGCTCAGTGGATCGCTCGGGTACCAGCTTGCAAGTATGGCATCGGTAACCAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCTAACCTGAAAAGACTAAATCTTGCTAGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATTACTTCTCTTCAATACTTGAATATCAGTCACAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATTCACATTGGATCTGTCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTGGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAACCGTTTCACTGGCTGGATCCCTAATCAACTGAAGAACATTAATCTGCGGAAAGATGGCAACTCCTGGAGCTCAGGTCCTGCACCCCCTCCCCCACCTGGTACACCCCCAGCCACCAGAAGGAACCGGAGTCACAGTTCTGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGATTAGGTGGTGGTGCTATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCGGTAGTAGCATTCTTCATCGTCAAGAGGAGATCGAAGAGATCATCTTCAGACATTGAAAGGCTTGATAATCAACCCCTGCAACCTCTTAAAATGACTGCAACACAAGAAATGAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACAGCATTTGACACTTCTGCTGCAATTAATCTCAAACCCCCACCTATCGATCGTCATAAATCGTTTGATGAAGATGACTTCTCAAAACGAGCACCAGTCGTCAAGAAGGCCAGTGCAGCTCCTATTAATGTAAAGGCATATTCAATAGCAGACCTGCAAATGGCTACAGGTAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTATATCGGGCTGAGTTTGATAACGGAAAGGTTCTTGCGGTGAAAAAGATAAACTCGTCTGCATTACCGAGGGAATTAGCTGAAGATTTCACTGACATTGTTTCTCAAGTCTCCCAGTTACACCATCCCAATATAACCGAGCTGGTGGGTTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTACGACTTCTTGCATCTATCAGATGAATACAACAGACCTCTAATATGGAATTCCCGCATTAAGATTGCCTTGGGAACAGCGCGCGCATTAGAGTATCTTCATGAAGTATGCTCCCCGTCAATTGTTCATAGAAACATCAAGTCCGCTAACATATTGCTGGATGCCGAATTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCTTTGTACCTAATGCAGATCAGGCACTGGATGACGATGCAAGTTCAGGATACACTGCCCCCGAGGTCGCCATGTCCGGCCAATATACTTTGAAAAGCGACGTCTACAGTTTTGGTGTGGTCATGCTGGAACTCCTGACTGGACGCAAACCGTTCGATAGTTCAAGGTCGAGGATGGAGCAATCTTTGGTTCGATGGGCTACACCACAGCTTCATGACATTGATGCTTTAACGAAGATGGTAGATCCCGAGCTCAAAGGGCTATATCCAGTTAAATCTCTCTCCCGATTTGCAGACGTGATTGCGCTTTGCGTCCAGACTGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTGGAAGCGTTGGTTCGTCTGGTACAGCGAGCTAACATGAGTAAGAGAACAGTTGGGAACGATAATGCAACATCTCCCAGGGGAGGAGAGATGGGTGGAGAGGACACACCATAG | 2145 | 45.64 | MNWRWRELISLILLCILGWKPSSIQGATDPTDASALRVLYSSLNSPSQLTKWNANGDDPCGQSWKGITCSGTRVTEINLSGLGLSGSLGYQLASMASVTNLDVSNNNIGGEIVYQLPPNLKRLNLARNNFNKGIPYSISLITSLQYLNISHNQLQNPLIDMFGQLTSLFTLDLSFNAMSGNLPQSFSSLSGISTMNLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPNQLKNINLRKDGNSWSSGPAPPPPPGTPPATRRNRSHSSGGSPSNGGSSEGQKSGLGGGAIAGIIISVLVVGAVVAFFIVKRRSKRSSSDIERLDNQPLQPLKMTATQEMKSEETSSTFYPTAFDTSAAINLKPPPIDRHKSFDEDDFSKRAPVVKKASAAPINVKAYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDNGKVLAVKKINSSALPRELAEDFTDIVSQVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNRPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAEFSPHLSDSGLESFVPNADQALDDDASSGYTAPEVAMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTVGNDNATSPRGGEMGGEDTP | 714 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 5444729 | 5450883 | + | CmaCh17G006440.1 | Cma17g00644 | 312539 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00644 | 714 | Gene3D | Transferase(Phosphotransferase) domain 1 | 488 | 703 | - | - | |
Cma17g00644 | 714 | ProSiteProfiles | Protein kinase domain profile. | 409 | 684 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma17g00644 | 714 | Gene3D | Ribonuclease Inhibitor | 30 | 174 | IPR032675 | - | |
Cma17g00644 | 714 | MobiDBLite | consensus disorder prediction | 260 | 281 | - | - | |
Cma17g00644 | 714 | MobiDBLite | consensus disorder prediction | 692 | 714 | - | - | |
Cma17g00644 | 714 | CDD | STKc_IRAK | 415 | 684 | - | - | |
Cma17g00644 | 714 | Gene3D | Phosphorylase Kinase; domain 1 | 374 | 486 | - | - | |
Cma17g00644 | 714 | Pfam | Leucine Rich repeat | 142 | 156 | IPR001611 | GO:0005515 | |
Cma17g00644 | 714 | Pfam | Leucine Rich repeat | 97 | 114 | IPR001611 | GO:0005515 | |
Cma17g00644 | 714 | Gene3D | Ribonuclease Inhibitor | 175 | 246 | IPR032675 | - | |
Cma17g00644 | 714 | PANTHER | OS01G0253100 PROTEIN | 19 | 708 | IPR045271 | GO:0004714|GO:0006468 | |
Cma17g00644 | 714 | Pfam | Protein tyrosine and serine/threonine kinase | 411 | 681 | IPR001245 | GO:0004672|GO:0006468 | |
Cma17g00644 | 714 | SUPERFAMILY | L domain-like | 28 | 234 | - | - | |
Cma17g00644 | 714 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 | 19 | 708 | - | - | |
Cma17g00644 | 714 | ProSitePatterns | Protein kinases ATP-binding region signature. | 415 | 438 | IPR017441 | GO:0005524 | |
Cma17g00644 | 714 | MobiDBLite | consensus disorder prediction | 238 | 283 | - | - | |
Cma17g00644 | 714 | Pfam | Leucine rich repeat N-terminal domain | 30 | 70 | IPR013210 | - | |
Cma17g00644 | 714 | SUPERFAMILY | Protein kinase-like (PK-like) | 391 | 681 | IPR011009 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00022 | Cma17g00644 | CCT | |
Cma08g00837 | Cma17g00644 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma15g01427 | Cma-Chr15:9019149 | Cma17g00644 | Cma-Chr17:5444729 | 0 | dispersed | |
Cma17g00644 | Cma-Chr17:5444729 | Cma18g00568 | Cma-Chr18:3822270 | 0 | dispersed | |
Cma01g00022 | Cma-Chr1:86530 | Cma17g00644 | Cma-Chr17:5444729 | 0 | wgd | |
Cma14g01226 | Cma-Chr14:9734658 | Cma17g00644 | Cma-Chr17:5444729 | 0 | wgd | |
Cma17g00644 | Cma-Chr17:5444729 | Cma08g00837 | Cma-Chr8:5074451 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69236 | PF07714 | PK_Tyr_Ser-Thr | 2.10E-43 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00644 | - | - | csv:101213107 | 1200.27 |