Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00644 ATGAATTGGAGGTGGAGGGAGCTGATATCTCTCATCCTTCTTTGCATTCTAGGATGGAAGCCTAGCTCCATTCAAGGAGCCACAGATCCAACAGATGCCTCTGCTTTAAGAGTTTTGTACTCCAGCTTAAACTCGCCGTCTCAGTTAACCAAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGGATTACTTGTTCTGGCACACGGGTTACGGAAATAAACTTATCTGGCCTTGGGCTCAGTGGATCGCTCGGGTACCAGCTTGCAAGTATGGCATCGGTAACCAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCTAACCTGAAAAGACTAAATCTTGCTAGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATTACTTCTCTTCAATACTTGAATATCAGTCACAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATTCACATTGGATCTGTCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTGGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAACCGTTTCACTGGCTGGATCCCTAATCAACTGAAGAACATTAATCTGCGGAAAGATGGCAACTCCTGGAGCTCAGGTCCTGCACCCCCTCCCCCACCTGGTACACCCCCAGCCACCAGAAGGAACCGGAGTCACAGTTCTGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGATTAGGTGGTGGTGCTATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCGGTAGTAGCATTCTTCATCGTCAAGAGGAGATCGAAGAGATCATCTTCAGACATTGAAAGGCTTGATAATCAACCCCTGCAACCTCTTAAAATGACTGCAACACAAGAAATGAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACAGCATTTGACACTTCTGCTGCAATTAATCTCAAACCCCCACCTATCGATCGTCATAAATCGTTTGATGAAGATGACTTCTCAAAACGAGCACCAGTCGTCAAGAAGGCCAGTGCAGCTCCTATTAATGTAAAGGCATATTCAATAGCAGACCTGCAAATGGCTACAGGTAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTATATCGGGCTGAGTTTGATAACGGAAAGGTTCTTGCGGTGAAAAAGATAAACTCGTCTGCATTACCGAGGGAATTAGCTGAAGATTTCACTGACATTGTTTCTCAAGTCTCCCAGTTACACCATCCCAATATAACCGAGCTGGTGGGTTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTACGACTTCTTGCATCTATCAGATGAATACAACAGACCTCTAATATGGAATTCCCGCATTAAGATTGCCTTGGGAACAGCGCGCGCATTAGAGTATCTTCATGAAGTATGCTCCCCGTCAATTGTTCATAGAAACATCAAGTCCGCTAACATATTGCTGGATGCCGAATTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCTTTGTACCTAATGCAGATCAGGCACTGGATGACGATGCAAGTTCAGGATACACTGCCCCCGAGGTCGCCATGTCCGGCCAATATACTTTGAAAAGCGACGTCTACAGTTTTGGTGTGGTCATGCTGGAACTCCTGACTGGACGCAAACCGTTCGATAGTTCAAGGTCGAGGATGGAGCAATCTTTGGTTCGATGGGCTACACCACAGCTTCATGACATTGATGCTTTAACGAAGATGGTAGATCCCGAGCTCAAAGGGCTATATCCAGTTAAATCTCTCTCCCGATTTGCAGACGTGATTGCGCTTTGCGTCCAGACTGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTGGAAGCGTTGGTTCGTCTGGTACAGCGAGCTAACATGAGTAAGAGAACAGTTGGGAACGATAATGCAACATCTCCCAGGGGAGGAGAGATGGGTGGAGAGGACACACCATAG 2145 45.64 MNWRWRELISLILLCILGWKPSSIQGATDPTDASALRVLYSSLNSPSQLTKWNANGDDPCGQSWKGITCSGTRVTEINLSGLGLSGSLGYQLASMASVTNLDVSNNNIGGEIVYQLPPNLKRLNLARNNFNKGIPYSISLITSLQYLNISHNQLQNPLIDMFGQLTSLFTLDLSFNAMSGNLPQSFSSLSGISTMNLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPNQLKNINLRKDGNSWSSGPAPPPPPGTPPATRRNRSHSSGGSPSNGGSSEGQKSGLGGGAIAGIIISVLVVGAVVAFFIVKRRSKRSSSDIERLDNQPLQPLKMTATQEMKSEETSSTFYPTAFDTSAAINLKPPPIDRHKSFDEDDFSKRAPVVKKASAAPINVKAYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDNGKVLAVKKINSSALPRELAEDFTDIVSQVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNRPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAEFSPHLSDSGLESFVPNADQALDDDASSGYTAPEVAMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTVGNDNATSPRGGEMGGEDTP 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5444729 5450883 + CmaCh17G006440.1 Cma17g00644 312539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00644 714 Gene3D Transferase(Phosphotransferase) domain 1 488 703 - -
Cma17g00644 714 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00644 714 Gene3D Ribonuclease Inhibitor 30 174 IPR032675 -
Cma17g00644 714 MobiDBLite consensus disorder prediction 260 281 - -
Cma17g00644 714 MobiDBLite consensus disorder prediction 692 714 - -
Cma17g00644 714 CDD STKc_IRAK 415 684 - -
Cma17g00644 714 Gene3D Phosphorylase Kinase; domain 1 374 486 - -
Cma17g00644 714 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515
Cma17g00644 714 Pfam Leucine Rich repeat 97 114 IPR001611 GO:0005515
Cma17g00644 714 Gene3D Ribonuclease Inhibitor 175 246 IPR032675 -
Cma17g00644 714 PANTHER OS01G0253100 PROTEIN 19 708 IPR045271 GO:0004714|GO:0006468
Cma17g00644 714 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672|GO:0006468
Cma17g00644 714 SUPERFAMILY L domain-like 28 234 - -
Cma17g00644 714 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 708 - -
Cma17g00644 714 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Cma17g00644 714 MobiDBLite consensus disorder prediction 238 283 - -
Cma17g00644 714 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cma17g00644 714 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00022 Cma17g00644 CCT
Cma08g00837 Cma17g00644 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01427 Cma-Chr15:9019149 Cma17g00644 Cma-Chr17:5444729 0 dispersed
Cma17g00644 Cma-Chr17:5444729 Cma18g00568 Cma-Chr18:3822270 0 dispersed
Cma01g00022 Cma-Chr1:86530 Cma17g00644 Cma-Chr17:5444729 0 wgd
Cma14g01226 Cma-Chr14:9734658 Cma17g00644 Cma-Chr17:5444729 0 wgd
Cma17g00644 Cma-Chr17:5444729 Cma08g00837 Cma-Chr8:5074451 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69236 PF07714 PK_Tyr_Ser-Thr 2.10E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00644 - - csv:101213107 1200.27