Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00648 ATGGAACAACCCATCGCCGCCGGAATCTCAAGTTCCGGCAACCACCTCCCAAAGCCGAAATACAACAGAAAAAAGCTCATAATCTTAGCCGTGTCTTCAACCCTCCTTCTGGTGGGCATCGTCGCCGGAGTGGTGAGCTCGAGAAACGCCGGCGGTGAGGAGTCCAAAAGCCATGCCATTGTGAAGAGCACGTGCAGTAGCACGCTGTATCCGGATCTGTGCTTTTCGAGCATTTTGAAGAACGATGAGGCGATGAAGAAAGTTAGTAATAAAAAGGATGTGATTGAGGTGTCGATTAATATTACGGTTAAAGCGGTGGAGGAGAATTATTTTAAGGTTTTGAAATTGTATGAGTTGAAGAATATTAGTCATAGGGAGAAGATTGCTCTTCATGATTGCCTTGAAACTATTGATGAGACGCTTGATGAGCTTCATAAGGCTACTGTTGACCTCCATGAATACCCAAATAAGAAGTCTCTTACTCAACAGGCTGATGATCTCAAGACCTTGCTTAGTTCCGCCATTACTAATCAGGAGACATGCCTCGACGGGTTTTCCCACGACGAGGCGGACAAGAACCTGCGGGACAAGCTAAAAGAGGGTCAAATAGAGGTAGAGCGCATGTGCAGCAACGCGCTAGCCATGATTAAGAACATGACCGATACAGACATAGCCAACTACGAGACCAAAATGGGAACAGCAGCCAACAGAAAGCTCAAGGAAGAGAACAACGACGAGCAAATCCAGTGGCCGGAGTGGCTGTCAGCCGGAGACCGACGTCTGCTGCAATCATCCTCCGTGAAGCCGGACGTGGTCGTGGCGGCGGATGGCAGCGGGAACTTCAAGACAGTGGCGGCCGCCGTGGCCGCCGCCCCGGTAAAAAGTAGCAAGAGATATGTGATCAGAATTAAAGCTGGGGTTTATAGAGAGAATGTGGATGTGCAAAAGAAGAAGACGAATATAATGTTTATGGGAGATGGAAGAAGTAACACTATAATTACCGGTAGCCGGAATGTCGTCGACGGCAGCACCACTTTTAACTCTGCCACCGTCGCTGCGGTGGGAGAAGGATTTCTAGCGCGTGACATCACATTCCAAAACACAGCCGGTCCCTCAAAGCACCAAGCGGTGGCTCTCCGCGTGGGAGCAGATCTCTCCGCCTTCTACCAATGCGACATGTTGGCTTATCAAGACACTCTCTACGTCCACTCCAACCGTCAGTTCTACATCAACTGTCTCATTTCCGGCACCGTCGATTTCATCTTCGGAAACGCCGCTGCCGTTTTCCAAGACTGTGACATTCACGCGCGTAGACCAAACTCGGGTCAGAAAAACATGGTCACGGCTCAGGGTCGGTCCGACCCAAACCAGAACACCGGAATCGTTATCCAGAAATCCCGAATCGGAGCCACCTCCGATCTCCGGTCGGTCCAGAAGAGCTTCCCGACGTTCCTCGGAAGACCGTGGAAGGAATATTCTAGAACCGTGATCATGCAGTCGTCGATAAGTGACGTCATTGACTCGAAGGGATGGCATGAGTGGAGCGGTAATTTTGCTCTCAACACGTTGTTTTACGGTGAGTATCAGAATACTGGACCGGGGGCTTCGACGGGCGGGAGGGTGACGTGGAAGGGGTTCAGGGTAATTCGGAGTGCCACTGAGGCTGAAGGTTTTACTCCTGGTAAATTTATTGGCGGTGGGAGTTGGTTGCGGGCGACTGGGTTTCCTTTTTCTCTAGGACTATGA 1746 50.57 MEQPIAAGISSSGNHLPKPKYNRKKLIILAVSSTLLLVGIVAGVVSSRNAGGEESKSHAIVKSTCSSTLYPDLCFSSILKNDEAMKKVSNKKDVIEVSINITVKAVEENYFKVLKLYELKNISHREKIALHDCLETIDETLDELHKATVDLHEYPNKKSLTQQADDLKTLLSSAITNQETCLDGFSHDEADKNLRDKLKEGQIEVERMCSNALAMIKNMTDTDIANYETKMGTAANRKLKEENNDEQIQWPEWLSAGDRRLLQSSSVKPDVVVAADGSGNFKTVAAAVAAAPVKSSKRYVIRIKAGVYRENVDVQKKKTNIMFMGDGRSNTIITGSRNVVDGSTTFNSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAVFQDCDIHARRPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRSVQKSFPTFLGRPWKEYSRTVIMQSSISDVIDSKGWHEWSGNFALNTLFYGEYQNTGPGASTGGRVTWKGFRVIRSATEAEGFTPGKFIGGGSWLRATGFPFSLGL 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5472057 5474964 + CmaCh17G006480.1 Cma17g00648 312543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00648 581 Pfam Pectinesterase 270 566 IPR000070 GO:0030599|GO:0042545
Cma17g00648 581 PANTHER PECTINESTERASE 25 580 - -
Cma17g00648 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 220 IPR035513 -
Cma17g00648 581 PANTHER PECTINESTERASE 25 580 - -
Cma17g00648 581 SUPERFAMILY Pectin lyase-like 266 580 IPR011050 -
Cma17g00648 581 Gene3D - 263 581 IPR012334 -
Cma17g00648 581 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Cma17g00648 581 SMART PMEI_2 56 215 IPR006501 GO:0004857
Cma17g00648 581 Pfam Plant invertase/pectin methylesterase inhibitor 60 215 IPR006501 GO:0004857
Cma17g00648 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 220 IPR035513 -
Cma17g00648 581 CDD PMEI-like_3 63 220 - -
Cma17g00648 581 ProSitePatterns Pectinesterase signature 1. 295 314 IPR018040 -
Cma17g00648 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 32 219 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00648 Cma-Chr17:5472057 Cma17g01067 Cma-Chr17:7630092 1.02E-172 dispersed
Cma18g01316 Cma-Chr18:10105679 Cma17g00648 Cma-Chr17:5472057 2.17E-145 dispersed
Cma14g01221 Cma-Chr14:9713508 Cma17g00648 Cma-Chr17:5472057 0 transposed
Cma14g01220 Cma-Chr14:9709640 Cma17g00648 Cma-Chr17:5472057 9.16E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00648 K01051 - csv:101212388 978.778