Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00656 ATGGTGTTTCATTCTCAAGCTCCTTCAAGATATACTTGTAGGCTTCTTGCAATCCCCTGTGGGAGTGTTCCTGAAGATAAATTTAAGAAGGATAATCCAGAGGATGAGCAGAGATATCCTTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGCCCAATCCTAGTAAAGATGAGTTTTGTAGGATTATTGAATCGTATAGACCGAACATTGTTTACTTACAAGGGGAACGACTCGAGAATGATGAAGTTGGTTCTTTAGTATGGGAAGGTGTTGATTTGTTCACCGTAGAAGCGATTAGTGGGCTCTTTAGTTCTCCGTTGCCGACCACTGTATATTTGGAAATAGCCAATGGAGATGAAGTAGCTGATGCACTTCATTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACATTTTCTTGTTATGCAGCATGCCATTTCCGTAATGCATTTCTTTCGGTTCTTCAGAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGCACATGCTTCATTTAGGATGTATTGCTTGGGAAACAGCCTTGTTCTTCCTAACAGTAGTCATAACGACGTTAGTGAAGATCTAGGACCACATCTTCTAGGAGAACGTTTGAGAATAAATGTTGAACCCCTTGAGAAAGAGGCAGCTGATGATGAAGAAAGTTCATCGGAAGTTCCTTCTGTGAGCATACTTGATCATTATGTTGAAATGAGATTTCTCATATGTGGTGAACCAAGGTCATTGGATGCTTACGTATTAGGAGCTCTGGAGGATGGTCTTAACGCTCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCATGGCAAGTTCAGTGCCCCTCCTCCACCTCTCCAGGCAGGAATGCACTCTGATGGTGTTGTGACCATGCGCTGTGACATATCAACATGCAGTTTTGCCCACATCTCACTATTGGTGTCGGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGACAGAAGCGAACCAGTACAGACACTAATAGATGGTGATGGAAGCAAACACTTGCGTGAGCCACGGAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTCGAAGTTAGCATGAAGGTCCCTTCGTGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTTGTACTTGGCATTGCCGGCATTCAGGGTTTGTCTGTAGCTTCTTTTGAGAAGGACGATGCTGAACGCCTCCTTTTCTTCGGTTCAAGGAAGCAAAGAGATTTATTTCTAAACAATTTAACCGATAGCACACCTCCAAGCTGGTTGAAACCACCTGCACCTAGAAAGAGATTGAGAAATGTGAAGGACATAAGGCTTGGTTCTCATGATGTTATTCAACATCTGAAGGTTTCGTCTGGAAGCAGAATAGACGGCGAGAACATGGAAATAGGATCAAGGAATGGTTTCAGCACTCCCATGTTTCCACTCCCGAGAAGGAGAGGAATGAAAATTGCCGCAATGAGGCCCATTCCTCACGTTAATCGCCATAAAATGATATATTTTCGTGGAATAGCTGAGACAGGTGGGCACAATGGAGGCCTGGTTAAAGCTAGTGTTTCTTCTAGTAATTCAGCGAAGCATGTTATTGTAGGTTCAGCTTCAGTTTTGCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATTATTCCCATGAATCCACTACCTTTGAAGAAGCATGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTCTTGCTCTTCGAGGTCATAATCGACTTATTCCTCCTGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTCGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGTATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTATGAAACTTATCTTCTCGAGTATGAATTGGCGCATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGCATTTGTGGCGAGTGGGCTCACTTTGGTTGTGACCGAAGGCAGGGTCTGGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTACAAGAAGAAGAAAGTTGGTAATGGGTTGTCTCCAGGCTTATCCTCAAGACCAATATGA 2346 42.84 MVFHSQAPSRYTCRLLAIPCGSVPEDKFKKDNPEDEQRYPFPQLNSSGRLEVQVLPNPSKDEFCRIIESYRPNIVYLQGERLENDEVGSLVWEGVDLFTVEAISGLFSSPLPTTVYLEIANGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCLGNSLVLPNSSHNDVSEDLGPHLLGERLRINVEPLEKEAADDEESSSEVPSVSILDHYVEMRFLICGEPRSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGMHSDGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRSEPVQTLIDGDGSKHLREPRKSASVACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVVLGIAGIQGLSVASFEKDDAERLLFFGSRKQRDLFLNNLTDSTPPSWLKPPAPRKRLRNVKDIRLGSHDVIQHLKVSSGSRIDGENMEIGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMIYFRGIAETGGHNGGLVKASVSSSNSAKHVIVGSASVLQQKMFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVGNGLSPGLSSRPI 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5512746 5518359 + CmaCh17G006560.1 Cma17g00656 312551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00656 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 768 - -
Cma17g00656 781 SMART bright_3 598 702 IPR001606 GO:0003677
Cma17g00656 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Cma17g00656 781 Pfam ARID/BRIGHT DNA binding domain 601 697 IPR001606 GO:0003677
Cma17g00656 781 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Cma17g00656 781 CDD ARID 600 697 - -
Cma17g00656 781 CDD PHD_ARID4_like 707 758 - -
Cma17g00656 781 Gene3D - 595 700 IPR036431 GO:0003677
Cma17g00656 781 SUPERFAMILY ARID-like 600 712 IPR036431 GO:0003677
Cma17g00656 781 SMART ARID_2 594 697 - -
Cma17g00656 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 764 IPR013083 -
Cma17g00656 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 768 IPR042293 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00017 Cma-Chr1:66960 Cma17g00656 Cma-Chr17:5512746 0 wgd
Cma14g01215 Cma-Chr14:9687300 Cma17g00656 Cma-Chr17:5512746 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36663 PF01388 ARID 2.50E-15 CL0123 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00656 - - csv:101214243 1398.65