Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00656 ATGGTGTTTCATTCTCAAGCTCCTTCAAGATATACTTGTAGGCTTCTTGCAATCCCCTGTGGGAGTGTTCCTGAAGATAAATTTAAGAAGGATAATCCAGAGGATGAGCAGAGATATCCTTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGCCCAATCCTAGTAAAGATGAGTTTTGTAGGATTATTGAATCGTATAGACCGAACATTGTTTACTTACAAGGGGAACGACTCGAGAATGATGAAGTTGGTTCTTTAGTATGGGAAGGTGTTGATTTGTTCACCGTAGAAGCGATTAGTGGGCTCTTTAGTTCTCCGTTGCCGACCACTGTATATTTGGAAATAGCCAATGGAGATGAAGTAGCTGATGCACTTCATTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACATTTTCTTGTTATGCAGCATGCCATTTCCGTAATGCATTTCTTTCGGTTCTTCAGAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGCACATGCTTCATTTAGGATGTATTGCTTGGGAAACAGCCTTGTTCTTCCTAACAGTAGTCATAACGACGTTAGTGAAGATCTAGGACCACATCTTCTAGGAGAACGTTTGAGAATAAATGTTGAACCCCTTGAGAAAGAGGCAGCTGATGATGAAGAAAGTTCATCGGAAGTTCCTTCTGTGAGCATACTTGATCATTATGTTGAAATGAGATTTCTCATATGTGGTGAACCAAGGTCATTGGATGCTTACGTATTAGGAGCTCTGGAGGATGGTCTTAACGCTCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCATGGCAAGTTCAGTGCCCCTCCTCCACCTCTCCAGGCAGGAATGCACTCTGATGGTGTTGTGACCATGCGCTGTGACATATCAACATGCAGTTTTGCCCACATCTCACTATTGGTGTCGGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGACAGAAGCGAACCAGTACAGACACTAATAGATGGTGATGGAAGCAAACACTTGCGTGAGCCACGGAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTCGAAGTTAGCATGAAGGTCCCTTCGTGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTTGTACTTGGCATTGCCGGCATTCAGGGTTTGTCTGTAGCTTCTTTTGAGAAGGACGATGCTGAACGCCTCCTTTTCTTCGGTTCAAGGAAGCAAAGAGATTTATTTCTAAACAATTTAACCGATAGCACACCTCCAAGCTGGTTGAAACCACCTGCACCTAGAAAGAGATTGAGAAATGTGAAGGACATAAGGCTTGGTTCTCATGATGTTATTCAACATCTGAAGGTTTCGTCTGGAAGCAGAATAGACGGCGAGAACATGGAAATAGGATCAAGGAATGGTTTCAGCACTCCCATGTTTCCACTCCCGAGAAGGAGAGGAATGAAAATTGCCGCAATGAGGCCCATTCCTCACGTTAATCGCCATAAAATGATATATTTTCGTGGAATAGCTGAGACAGGTGGGCACAATGGAGGCCTGGTTAAAGCTAGTGTTTCTTCTAGTAATTCAGCGAAGCATGTTATTGTAGGTTCAGCTTCAGTTTTGCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATTATTCCCATGAATCCACTACCTTTGAAGAAGCATGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTCTTGCTCTTCGAGGTCATAATCGACTTATTCCTCCTGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTCGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGTATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTATGAAACTTATCTTCTCGAGTATGAATTGGCGCATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGCATTTGTGGCGAGTGGGCTCACTTTGGTTGTGACCGAAGGCAGGGTCTGGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTACAAGAAGAAGAAAGTTGGTAATGGGTTGTCTCCAGGCTTATCCTCAAGACCAATATGA 2346 42.84 MVFHSQAPSRYTCRLLAIPCGSVPEDKFKKDNPEDEQRYPFPQLNSSGRLEVQVLPNPSKDEFCRIIESYRPNIVYLQGERLENDEVGSLVWEGVDLFTVEAISGLFSSPLPTTVYLEIANGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCLGNSLVLPNSSHNDVSEDLGPHLLGERLRINVEPLEKEAADDEESSSEVPSVSILDHYVEMRFLICGEPRSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGMHSDGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRSEPVQTLIDGDGSKHLREPRKSASVACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVVLGIAGIQGLSVASFEKDDAERLLFFGSRKQRDLFLNNLTDSTPPSWLKPPAPRKRLRNVKDIRLGSHDVIQHLKVSSGSRIDGENMEIGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMIYFRGIAETGGHNGGLVKASVSSSNSAKHVIVGSASVLQQKMFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVGNGLSPGLSSRPI 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5512746 5518359 + CmaCh17G006560.1 Cma17g00656 312551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00656 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 768 - -
Cma17g00656 781 SMART bright_3 598 702 IPR001606 GO:0003677
Cma17g00656 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Cma17g00656 781 Pfam ARID/BRIGHT DNA binding domain 601 697 IPR001606 GO:0003677
Cma17g00656 781 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Cma17g00656 781 CDD ARID 600 697 - -
Cma17g00656 781 CDD PHD_ARID4_like 707 758 - -
Cma17g00656 781 Gene3D - 595 700 IPR036431 GO:0003677
Cma17g00656 781 SUPERFAMILY ARID-like 600 712 IPR036431 GO:0003677
Cma17g00656 781 SMART ARID_2 594 697 - -
Cma17g00656 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 764 IPR013083 -
Cma17g00656 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 768 IPR042293 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00656 - - - csv:101214243 1398.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00017 Cma-Chr1:66960 Cma17g00656 Cma-Chr17:5512746 0 wgd
Cma14g01215 Cma-Chr14:9687300 Cma17g00656 Cma-Chr17:5512746 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00095 . 1 358 ARID Transcription Factor Family AT1G04880 56.8 2.5e-106 383.3
Cma08g01025 . 60 399 ARID Transcription Factor Family AT1G04880 60.3 1.2e-105 380.9
Cma01g02043 . 141 420 ARID Transcription Factor Family AT1G20910 67.5 2.2e-103 373.2
Cma16g01291 . 163 432 ARID Transcription Factor Family AT1G20910 60.3 2.7e-88 323.2
Cma09g00079 CST 16 315 ARID Transcription Factor Family AT1G76110 67.0 1.3e-112 403.7
Cma01g01993 CST 16 312 ARID Transcription Factor Family AT1G76110 65.3 3.6e-110 395.6
Cma01g02043 . 140 450 ARID Transcription Factor Family AT1G76510 72.8 1.6e-126 450.3
Cma16g01291 . 154 462 ARID Transcription Factor Family AT1G76510 61.6 8.2e-107 384.8
Cma01g00017 . 1 785 ARID Transcription Factor Family AT3G43240 58.4 6.1e-259 891.0
Cma14g01215 . 1 782 ARID Transcription Factor Family AT3G43240 57.9 6.1e-259 891.0
Cma17g00656 . 2 771 ARID Transcription Factor Family AT3G43240 56.9 1.3e-253 873.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36663 PF01388 ARID 2.50E-15 CL0123 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00656 Cma_Chr17 FPKM 10.058844 9.566026 13.611223 14.001553 14.864276 17.383942 16.35582 10.681384 9.545726 9.649515