Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00657 ATGGCTGCTCTTCTTCGAGGACTCTTTCTCTTCTCTCTCCTCCTCCCACTTTCTTCTTCTTCGATCGATAATTCCAAGAAGACCTTCATTGTGCAGGTTAACAGAGATGCCAGCAAGCCTTCCATTTTCCCAACACACAGGCACTGGTACGAGTCCTCTCTGGCCTCCATCTCTCCCAACAAGCCAACACCGTCACAACCAGATGCTTCTGGTAGCGACGGACCCATCATTCACACATATGAAACCCTCTTCCATGGCTTCTCTGCAAAGCTCTCACCTTTTGAAGTTCAGAACCTTCAAACCCTTCCCCATATCGCCGCCGTCATCCCCGAGCAGGTTCGCCATCCTCATACAACTCGTTCCCCTGAGTTTCTTGGCCTTACGACCTCTGATAGTGCAGGGTTGCTTAAAGAGTCCGACTTTGGATCTGACCTTGTAATCGGAGTTATCGATACTGGTATTTGGCCGGAGAGGCAGAGCTTCAATGACCGCGATCTGGGTCCAATTCCTTCCAAATGGAAAGGCCGGTGCTTGGAGTCTAAACACTTCCCAGCCACCTCTTGCAACCGTAAGCTTATTGGGGCTCGATTCTTCTGTAGTGGGTACGAGGCCACCAATGGAAAGATGAACGAGACCACCGAGTATCGCTCGCCGCGTGATTCCGATGGTCATGGTACTCACACGGCGTCCATTGCTGCAGGTCGTTATGTGTTTCCAGCTTCAACTTTAGGCTACGCTCGTGGTAAAGCGGCCGGAATGGCTCCTAAGGCCCGTCTTGCTGCTTATAAAGTCTGTTGGAACGCAGGCTGCTACGACTCTGACATTCTTGCAGCTTTTGATGCTGCCGTTTCCGACGGTGTGGATGTGGTATCACTCAGCGTCGGCGGTGTGGTTGTGCCGTACTATCTCGATGCCATCGCTATTGGGGCTTTTAGAGCGGTGGCAGCCGGTGTTTTTGTCTCGGCATCAGCCGGTAACGGTGGCCCAGGTGGGCTCACTGTGACTAACGTAGCACCATGGGTTACAACAGTAGGAGCTGGAACCATGGATAGAGATTTTCCTGCTGATGTTAAGCTGGGAAACGGGAGGGTTATACTAGGTACTAGTGTCTACGGCGGACCTGCTTTGGTTCCTGGTCGTATGCATCCTCTAATTTATGCAGGAACCGAAGGCGGTGATGGGTATTCTTCGTCTCTATGCTTAGAAGGCTCATTGAACCCAAATCTAGTGAAAGGGAAGATTGTAGTATGTGATAGGGGCATAAATTCAAGAGCTGCTAAAGGTGAGGTTGTGAAAAAGGCTGGAGGATTAGGAATGATTTTAGCAAATGGGGTCTTTGACGGTGAGGGTTTGGTAGCTGACTGCCATGTTCTACCCGCCACTGCCGTCGGTGCAGCCGGCGGCGACGAGATCCGCAAATATATTGCAGAAGCAGCGAAGTCTAAGTCACCGCCAACAGCTACAATTTTGTTCAAGGGAACTCGGCTTGGAGTCAGGCCAGCACCGGTTGTTGCTTCATTTTCAGCTCGAGGTCCTAATCCAGAGTCCCCTGAAATCGTGAAGCCTGATGTGATTGCGCCAGGATTGAACATTCTTGCCGCTTGGCCTGATAAAATTGGGCCCTCTGGAATTCCCACAGACAAGCGTACCACAGAGTTCAACATACTTTCCGGCACTTCCATGGCCTGTCCTCATGTCTCTGGCTTGGCTGCTCTGCTTAAAGCGGCACACCCAGGGTGGAGTCCAGCCGCTATAAAATCAGCCCTAATGACTACAGCTTATACCTTGGACAACAGGGGTGAGACAATGTTAGACGAATCTTCAGGCAATACTTCTACGGTCTTAGACTTTGGAGCTGGTCATGTTCACCCACAAAAGGCAATGGACCCTGGCTTAATCTATGACCTGAACACATATGATTATGTAGATTTCTTGTGTAACGCCAACTACACCACTAAGAACATCCAAGTTATTACGGGGAAGATTGCAGATTGCAGCGGCGCAAAAAGGGCTGGGCATACTGGGAATTTGAACTACCCTTCATTGTCTGTGGTGTTTCAACAATATGGTAAACATAAGATGTCTACGCATTTCATTAGAAGTGTGACCAACGTTGGGGACGCTAATTCTATCTACAAGGTAACAATCAAGCCACCAAGAGGAATTTCAGTGACTGTGGAGCCAGAAAAGCTGGCGTTTAGAAGGGTTGGGCAAAAATTGAGCTTCTTGGTTAGGGTCCAAGCAATGGCTTTAAGACTTTCCTCTGGAAGCTCTAGCATGAAGAGTGGTTCCATAGTTTGGACTGATGGAAAGCACGTAGTTACTAGTCCTTTGGTTGTCACCATGCAGCAACCCCTGCAGTAG 2364 49.62 MAALLRGLFLFSLLLPLSSSSIDNSKKTFIVQVNRDASKPSIFPTHRHWYESSLASISPNKPTPSQPDASGSDGPIIHTYETLFHGFSAKLSPFEVQNLQTLPHIAAVIPEQVRHPHTTRSPEFLGLTTSDSAGLLKESDFGSDLVIGVIDTGIWPERQSFNDRDLGPIPSKWKGRCLESKHFPATSCNRKLIGARFFCSGYEATNGKMNETTEYRSPRDSDGHGTHTASIAAGRYVFPASTLGYARGKAAGMAPKARLAAYKVCWNAGCYDSDILAAFDAAVSDGVDVVSLSVGGVVVPYYLDAIAIGAFRAVAAGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTMDRDFPADVKLGNGRVILGTSVYGGPALVPGRMHPLIYAGTEGGDGYSSSLCLEGSLNPNLVKGKIVVCDRGINSRAAKGEVVKKAGGLGMILANGVFDGEGLVADCHVLPATAVGAAGGDEIRKYIAEAAKSKSPPTATILFKGTRLGVRPAPVVASFSARGPNPESPEIVKPDVIAPGLNILAAWPDKIGPSGIPTDKRTTEFNILSGTSMACPHVSGLAALLKAAHPGWSPAAIKSALMTTAYTLDNRGETMLDESSGNTSTVLDFGAGHVHPQKAMDPGLIYDLNTYDYVDFLCNANYTTKNIQVITGKIADCSGAKRAGHTGNLNYPSLSVVFQQYGKHKMSTHFIRSVTNVGDANSIYKVTIKPPRGISVTVEPEKLAFRRVGQKLSFLVRVQAMALRLSSGSSSMKSGSIVWTDGKHVVTSPLVVTMQQPLQ 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5523236 5525599 + CmaCh17G006570.1 Cma17g00657 312552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00657 787 Pfam PA domain 383 471 IPR003137 -
Cma17g00657 787 ProSitePatterns Serine proteases, subtilase family, serine active site. 558 568 IPR023828 -
Cma17g00657 787 Pfam Fibronectin type-III domain 676 780 IPR041469 -
Cma17g00657 787 CDD PA_subtilisin_like 356 489 - -
Cma17g00657 787 ProSiteProfiles Serine proteases, subtilase domain profile. 121 628 - -
Cma17g00657 787 Gene3D - 350 497 - -
Cma17g00657 787 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Cma17g00657 787 PRINTS Subtilisin serine protease family (S8) signature 220 233 IPR015500 -
Cma17g00657 787 PRINTS Subtilisin serine protease family (S8) signature 557 573 IPR015500 -
Cma17g00657 787 CDD Peptidases_S8_3 115 594 IPR034197 -
Cma17g00657 787 Pfam Subtilase family 142 609 IPR000209 GO:0006508|GO:0008236
Cma17g00657 787 Pfam Peptidase inhibitor I9 28 115 IPR010259 -
Cma17g00657 787 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 117 IPR037045 -
Cma17g00657 787 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.5 8 786 - -
Cma17g00657 787 SUPERFAMILY Subtilisin-like 116 632 IPR036852 GO:0004252|GO:0006508
Cma17g00657 787 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED 8 786 - -
Cma17g00657 787 Gene3D - 645 783 - -
Cma17g00657 787 Gene3D Peptidase S8/S53 domain 144 641 IPR036852 GO:0004252|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00827 Cma17g00657 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00140 Cma-Chr5:625072 Cma17g00657 Cma-Chr17:5523236 5.67E-175 dispersed
Cma17g00657 Cma-Chr17:5523236 Cma20g00757 Cma-Chr20:3568839 0 dispersed
Cma17g00657 Cma-Chr17:5523236 Cma08g00827 Cma-Chr8:5012638 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00657 - - csv:101210434 1375.53