Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00681 ATGGCGAATTTCCATCGATGTTCTTCTGTTTTCTTCTTCTTCTTCCTCTGTTTTCTCCCTGTAATTTTCTCTCGATCGCCGGATAAACAAGAGACTTTCATCGTTCACGTCTCTAAATCGGAGAAGCCTTCTCTGTTCTCCTCTCATTATCGCTGGCACTCCTCAATTCTTGATTCACTCTCTCCTTCTTCTCGTCCGAGGAAGCTTCTTTACAACTACGAACGTGCCGTTAATGGTTTCGCTGCACGCATCACGGCTGATCAGGCGGCGGAGTTGCGTCGTGTTCCAGGTGTTGTTTTGGTGATTCCGGATCGGATGCGTCAGCTTCATACGACTCGGACGCCTCATTTTTTAGGTCTGGCGGATAACCTAGGGCTATGGCCTGACACTAATTATGCGGATGATGTGATTATTGGCGTTCTTGATACCGGAATTTGGCCGGAGCATCCGAGTTTCTCTGATGAGGGTTTGTCTCCGGTGCCGGCAAGTTGGAAAGGAACCTGCGAGGCTGGGGAGGGATTTTCGGCTACCACCTGTAATCGGAAGATTATTGGTGCGAGAGCGTTCTTTCACGGATACGAATCTAATATAGGAAGACGGCTTCACGGTTTGTCCGATTTCAAATCTGCTAGGGATTCGGACGGCCATGGAACTCACACGGCCTCTACGGCTGCAGGTTCGTTCGTTAAGAATGCTAGTTTTTTCCAATACGCTCGTGGAGAAGCCAGAGGCATGGCGAGCAGAGCTCGTATCGCTGCCTACAAGATCTGCTGGGAATTTGGATGTTACGATTCTGACATCCTCGCCGCTATGGATCAGGCGATTGCCGATGGAGTCCACATTATCTCTCTCTCAGTCGGATCCTCGGGCCGTGCCCCTGCGTACTATAGAGATTCTATCGCAATTGGAGCGTTTGGTGCGATGCAGCACGGCATTGTCGTCTCTTGCTCCGCCGGAAACTCCGGTCCCGGTCCTTACACGGCTGTGAATATCGCTCCATGGATCCTCACTGTTGGTGCATCCACAATTGACAGGGAGTTTCTTGCCGATGTGATTCTTGGAGACGGTAGGGTTTTTAGCGGCGTGTCGCTCTACTCCGGAGATCCTCTTGGCGATTCCAAGCTTCCGCTGGTCTACGGTGGAGATTGCGGTAATAGGTATTGTTATTCTGGATCCCTCGATCCGTCAAAAGTTGCTGGGAAAATTGTCGTGTGCGATCGAGGAGGGAACGCCAGAGTCGCCAAAGGAAGCGCCGTGAAATCCGCCGGCGGTCTTGGTGTGATACTCGCCAACACGGAGGAAAACGGCGAAGAGCTCTTAGCAGATTCTCATCTTATTCCGGGAACAATGATTGGAGAAATCGCCGGTAACAAGCTTCGAGACTACATCCATTCGGATCCGAATCCATCTGCTACAATCGTGTTTCGAGGAACTGTTATTGGCGATTCGCCGCCGGCTCCGAGAGTCGCCGCCTTCTCCAGCCGTGGTCCGAACTACCGAACGGCGGAGATTCTGAAACCGGACGTTATAGCTCCAGGAGTTAACATTTTGGCTGGCTGGAGCGGGTACAACAGTCCGTCTAGTCTAAGCATCGATACTCGAAGAGTTGAGTTCAATATCATCTCTGGAACTTCAATGTCCTGCCCTCACGTCAGCGGCGTCGCTGCATTGCTCCGGAAGGCTTTTCCGACATGGACACCGGCAGCAATCAAATCTGCTCTGATCACCACTTCTTACTCCTTGGACACTTCCGGCAGCCCAATCAAAGATCTCTCCACCAGCAACGACTCAAATCCGTTCGTCCATGGCGGCGGCCATATCGATCCCAACAAAGCTCTGAATCCAGGCCTGATTTATGATCTCAATCCTCATGACTACGTTTCATTTCTCTGTTCAATCGGTTACGATTCTAGACAAATAGCTGTTTTCGTGAAGGATTCTTCATACTCTAACCTATGTGAACACAAATTGAGCAATCCCGGAAATCTGAACTACCCATCATTCGCGGTCGTGTTCACTTCCAACGGCGAGGAGGTGGTGAAGTATACAAGAACTGTCACAAATGTAGGAGATGAAGCCGATGCTGTTTATGAAGTGAAAGTAGAAGCCCCACAAGGCGTTGAAATCAGTGTTCTTCCAAACAAACTGGAGTTCAGCGCAAAGAAGACAACAGAGTCTTATGAAATTACATTCACCAAAATCAGTGGATTCAAGAACTCAGCAAGCTTCGGATCAATTCAATGGAGTGATGGAAGTCACATCGTTAGGAGTCCAATTGCTGTCTCGTTCAACACTGCATCCATAGCTTCGATGTAA 2316 49.74 MANFHRCSSVFFFFFLCFLPVIFSRSPDKQETFIVHVSKSEKPSLFSSHYRWHSSILDSLSPSSRPRKLLYNYERAVNGFAARITADQAAELRRVPGVVLVIPDRMRQLHTTRTPHFLGLADNLGLWPDTNYADDVIIGVLDTGIWPEHPSFSDEGLSPVPASWKGTCEAGEGFSATTCNRKIIGARAFFHGYESNIGRRLHGLSDFKSARDSDGHGTHTASTAAGSFVKNASFFQYARGEARGMASRARIAAYKICWEFGCYDSDILAAMDQAIADGVHIISLSVGSSGRAPAYYRDSIAIGAFGAMQHGIVVSCSAGNSGPGPYTAVNIAPWILTVGASTIDREFLADVILGDGRVFSGVSLYSGDPLGDSKLPLVYGGDCGNRYCYSGSLDPSKVAGKIVVCDRGGNARVAKGSAVKSAGGLGVILANTEENGEELLADSHLIPGTMIGEIAGNKLRDYIHSDPNPSATIVFRGTVIGDSPPAPRVAAFSSRGPNYRTAEILKPDVIAPGVNILAGWSGYNSPSSLSIDTRRVEFNIISGTSMSCPHVSGVAALLRKAFPTWTPAAIKSALITTSYSLDTSGSPIKDLSTSNDSNPFVHGGGHIDPNKALNPGLIYDLNPHDYVSFLCSIGYDSRQIAVFVKDSSYSNLCEHKLSNPGNLNYPSFAVVFTSNGEEVVKYTRTVTNVGDEADAVYEVKVEAPQGVEISVLPNKLEFSAKKTTESYEITFTKISGFKNSASFGSIQWSDGSHIVRSPIAVSFNTASIASM 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5701933 5704248 + CmaCh17G006810.1 Cma17g00681 312576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00681 771 Pfam Subtilase family 134 582 IPR000209 GO:0006508|GO:0008236
Cma17g00681 771 CDD Peptidases_S8_3 108 579 IPR034197 -
Cma17g00681 771 SUPERFAMILY Subtilisin-like 109 617 IPR036852 GO:0004252|GO:0006508
Cma17g00681 771 ProSitePatterns Serine proteases, subtilase family, serine active site. 543 553 IPR023828 -
Cma17g00681 771 Gene3D - 630 764 - -
Cma17g00681 771 Gene3D Peptidase S8/S53 domain 135 626 IPR036852 GO:0004252|GO:0006508
Cma17g00681 771 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 138 149 IPR023827 -
Cma17g00681 771 SUPERFAMILY PA domain 364 465 IPR046450 -
Cma17g00681 771 PRINTS Subtilisin serine protease family (S8) signature 133 152 IPR015500 -
Cma17g00681 771 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Cma17g00681 771 PRINTS Subtilisin serine protease family (S8) signature 542 558 IPR015500 -
Cma17g00681 771 Coils Coil 766 771 - -
Cma17g00681 771 Pfam PA domain 375 459 IPR003137 -
Cma17g00681 771 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 110 IPR037045 -
Cma17g00681 771 Gene3D - 344 480 - -
Cma17g00681 771 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.6 20 765 - -
Cma17g00681 771 Pfam Peptidase inhibitor I9 32 110 IPR010259 -
Cma17g00681 771 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 20 765 IPR045051 -
Cma17g00681 771 Pfam Fibronectin type-III domain 662 761 IPR041469 -
Cma17g00681 771 CDD PA_subtilisin_like 350 473 - -
Cma17g00681 771 ProSiteProfiles Serine proteases, subtilase domain profile. 108 613 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00804 Cma17g00681 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00681 Cma-Chr17:5701933 Cma20g00757 Cma-Chr20:3568839 0 dispersed
Cma10g00769 Cma-Chr10:3535963 Cma17g00681 Cma-Chr17:5701933 0 wgd
Cma11g00735 Cma-Chr11:3596817 Cma17g00681 Cma-Chr17:5701933 0 wgd
Cma17g00681 Cma-Chr17:5701933 Cma08g00804 Cma-Chr8:4855511 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00681 - - csv:101205194 1331.24