Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00700 ATGTCTTCGATTCGTCGGAGAAAGGCGGTGGAAAAAGAACCCAAAATTCCGAAGGATGAAGATGACGGTAAGAAGGACAAGGACGGCGGAAAAGTAAGGGAAGCTAAGGCAAAACAAAAGTGGTCGTGTGTGGATAACTGTTGCTGGTTTGTTGGTTGCGTTTGTACGACATGGTGGCTCTTGTTGTTTATGTACAATGCGATGCCTGCATCTTTGCCTCAGTATGTGACAGAGGCAATTACAGGACCATTGCCGGATCCGCCGGGTATCAAATTGAAGAAAGAGGGGTTGATGGTGAAGCACCCTGTGGTGTTTGTGCCGGGGATTGTCACTGGTGGGCTTGAACTTTGGGAAGGCCATGAATGTGCAGAAGGTTTGTTCAGGAAGCGTCTGTGGGGTGGCACATTTGGCGAAGTGTATAAAAGGGTCAGGCCTGTCAGTGGGCTTGTTGCTGCTGATTATTTCGCTCCTGGTTATTTTGTGTGGGCAGTCCTGATTGCTAACTTGGCTCGTCTTGGTTACGAGGAAAAAACTATGTATATGGCTGCATATGACTGGAGGATTTCATATCAAAACACAGAGGTTAGAGATCAATCCCTCAGCAGGATAAAAAGTAACATAGAATTGATGGTTGCTACGAATGGTGGTAAAAAGGCAGTAATAATTCCTCATTCGATGGGTGTTTTATACTTCATGCACTTTATGAAGTGGGTTGAAGCACCTGCGCCAATGGGTGGTGGGGGAGGATCGGACTGGTGTGCTAAACATATAAAAGCAATTATGAATATTGGTGGGCCTTTTCTAGGTGTTCCCAAAGCAGTTGCTGGGCTTTTCTCTGCTGAAGCTAAGGATATTGCATTTGCCAGGGCCATTGCGCCGGTTTTCTTGGACAATGATCTATTTCGCATTCAAACATTGCAGCATGTAATGAAGATGACTCGTACATGGGATTCGACCATGTCAATGATACCAAAAGGAGGGGATATTATATGGGGTGGCCTTGATTGGTCACCTGAAGATGACCATGTTCCCAGCAAAAGAAAGCTAAAAAGCGATGATACGCACAATGGTGATGGAGATACTTCTTCAAAGAAAGTTCACTATGGAAGGATGATATCATTTGGGAAAGACATAGCAGAGGCAGATTCATCTGAGATCGAGAGGATTGAGTTTTTGGATGCTATCAAGGGTCACAATGTTGCAAATACTACTTGCCATGACGTTTGGACTGAATACCATGACATGGGAATTGAGGGTATTAGAGCAATCTCAGATTACAAAGTTTATACAGCCGGATCAATGATAGATTTACTTCATTATGTTGCCCCACAATCAATGGAACGTGGGAGTGCCCATTTCTCTTATGGGATTGCTGACAACCTTGATGATCCGAAATATAACCACTACAAATATTGGTCAAACCCATTGGAGACGAGATTGCCAAATGCTCCAGACATGGAGATCTTTTCTTTATATGGAGTTGGAATACCAACCGAAAGAGCTTACGTTTACAAGCTATCTCCTGCTGCCGAATGCTACATTCCATTCCAGATTGATACTGCAGCTAACGATGGTGATCACAATGGCTGTCTGAAGGACGGAGTCTACACCGTCGACGGAGACGAAACTGTGCCCGTTCTAAGCGCCGGTTACATGTGCGCGAAAGGCTGGCGAGGGAAAACAAGGTATAATCCTTCAGGAATCCGAACGTATGTTAGAGAGTATAATCATTCTCCCCCATCAAACTTGCTAGAAGGACGGGGCACGCAGAGCGGCGCTCACGTCGATATCATGGGAAACTTTGCGTTGATCGAAGATATAATTCGAGTAGCAGCGGGGGCTGAAGGGGAAGATTTAGGAGGAGATCAAGTCTATTCTGGTATCTTTAGGTGCCAAGAGCAAAATGATAAAGCAATCTTAATTTTTCAGCCCAGAGATCTAGAATCAAACATAATTCGAGAATTCGAATCAAGAGATAAATCTAGAATAGATTCAGACTTGAAATTCGAGAATTCGAATAGAATCAAAGATCTAAAATTTTTTCTTTTCGCTTTTGACTCTTTCGTCTCCGAAAGCCGTAGGGACGAGCAAGAAGAAACGGTCATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGGGGCCGAAGAAACGGCGTCATCAAAGCTCTCACCGTAGATGTTGAAGAATTCTATCAACAATGTGATCCTGATAAGGAAAATCTATGCTTGTATGGATTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCAGAAGAAGTTCCTCCAGAACTTCCAGAGCCGGCGTTGGGCATTAATTTTGCCAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGTGACTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTCAATATGATCAATGATTTGCCAACTGTATTTGAAGTAGTTACAGGTCTTGCAAAGAAACAAGTCAAGGAAAAGTCATCAAGTGCGAATGGTAGCAAATCCAAGTCGAGCCTTAAAACGAGGGAAGCTGAAATGCAAGGAGTGTATGTGAGGCAGCCGCTGGCAAGGGAAGAGGTAGAGACGTTGTACGAAGAAGACGAAGATGAGCACGGCGACACCTTGTGTGGGGCGTGTGGCGAGAATTATGCAACAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGAAAGTGTGTGAGGATAACTCCTGCAAAAGCCGTGCACATTAATCAGTACAAATGCCCATCCTGCAGCAGCAAAAGAAGCCGCATTTAA 2859 44.28 MSSIRRRKAVEKEPKIPKDEDDGKKDKDGGKVREAKAKQKWSCVDNCCWFVGCVCTTWWLLLFMYNAMPASLPQYVTEAITGPLPDPPGIKLKKEGLMVKHPVVFVPGIVTGGLELWEGHECAEGLFRKRLWGGTFGEVYKRVRPVSGLVAADYFAPGYFVWAVLIANLARLGYEEKTMYMAAYDWRISYQNTEVRDQSLSRIKSNIELMVATNGGKKAVIIPHSMGVLYFMHFMKWVEAPAPMGGGGGSDWCAKHIKAIMNIGGPFLGVPKAVAGLFSAEAKDIAFARAIAPVFLDNDLFRIQTLQHVMKMTRTWDSTMSMIPKGGDIIWGGLDWSPEDDHVPSKRKLKSDDTHNGDGDTSSKKVHYGRMISFGKDIAEADSSEIERIEFLDAIKGHNVANTTCHDVWTEYHDMGIEGIRAISDYKVYTAGSMIDLLHYVAPQSMERGSAHFSYGIADNLDDPKYNHYKYWSNPLETRLPNAPDMEIFSLYGVGIPTERAYVYKLSPAAECYIPFQIDTAANDGDHNGCLKDGVYTVDGDETVPVLSAGYMCAKGWRGKTRYNPSGIRTYVREYNHSPPSNLLEGRGTQSGAHVDIMGNFALIEDIIRVAAGAEGEDLGGDQVYSGIFRCQEQNDKAILIFQPRDLESNIIREFESRDKSRIDSDLKFENSNRIKDLKFFLFAFDSFVSESRRDEQEETVMDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPDKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGLAKKQVKEKSSSANGSKSKSSLKTREAEMQGVYVRQPLAREEVETLYEEDEDEHGDTLCGACGENYATDEFWICCDICEKWFHGKCVRITPAKAVHINQYKCPSCSSKRSRI 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5789057 5798933 + CmaCh17G007000.1 Cma17g00700 312595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00700 952 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 889 947 IPR013083 -
Cma17g00700 952 Gene3D alpha/beta hydrolase 87 294 IPR029058 -
Cma17g00700 952 PANTHER PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1 17 638 - -
Cma17g00700 952 SUPERFAMILY FYVE/PHD zinc finger 888 949 IPR011011 -
Cma17g00700 952 Pfam Alfin 712 839 IPR021998 GO:0006355|GO:0042393
Cma17g00700 952 SUPERFAMILY alpha/beta-Hydrolases 91 356 IPR029058 -
Cma17g00700 952 ProSitePatterns Zinc finger PHD-type signature. 899 945 IPR019786 -
Cma17g00700 952 CDD PHD_AL_plant 898 948 IPR044104 -
Cma17g00700 952 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 17 638 - -
Cma17g00700 952 MobiDBLite consensus disorder prediction 1 31 - -
Cma17g00700 952 Pfam Lecithin:cholesterol acyltransferase 143 599 IPR003386 GO:0006629|GO:0008374
Cma17g00700 952 MobiDBLite consensus disorder prediction 342 364 - -
Cma17g00700 952 ProSiteProfiles Zinc finger PHD-type profile. 896 948 IPR019787 -
Cma17g00700 952 SMART PHD_3 898 946 IPR001965 -
Cma17g00700 952 Pfam PHD-finger 899 947 IPR019787 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00788 Cma17g00700 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01413 Cma-Chr5:10511813 Cma17g00700 Cma-Chr17:5789057 1.10E-113 dispersed
Cma12g01318 Cma-Chr12:10095380 Cma17g00700 Cma-Chr17:5789057 1.17E-120 dispersed
Cma16g00752 Cma-Chr16:4049411 Cma17g00700 Cma-Chr17:5789057 5.19E-109 dispersed
Cma17g00700 Cma-Chr17:5789057 Cma20g00541 Cma-Chr20:2606860 0 dispersed
Cma17g00700 Cma-Chr17:5789057 Cma08g00788 Cma-Chr8:4745716 2.94E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36668 PF02450 LCAT 4.60E-53 CL0028 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00700 K00679 - csv:101222563 1203.35