Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00701 ATGAATTTAGGAGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATTCCGGCCGAAATCGATTGGCAAATGCTCGATAAATCCAAATTCTTCTTTCTCGGTGCGGCGTTGTTTTCAGGTGTTTCTGCGTCTCTTTACCCTATGGTAGTGTTGAAAACTCGACAACAGGTCGCTCATTCGCAGCTTTCTTGCATCAGAACTGCCTTCCACCTTGTCCGGCACGAAGGTTTCCGAGCTCTCTACCGTGGATTCGGGACTTCTCTGATGGGGACTATCCCGGCTAGGGCTCTGTACATGGGAGCTCTTGAGTTTACAAAGAGCTATGTAGGGACTGCCACTGTTAGAGTCGGATTTCCAGAGGCCACTGCCGCTACCATTGCTAATGCAGCTGCTGGATTGAGTGCTGCAATGGCTGCTCAGCTTGTGTGGACTCCTGTTGATGTTGTGAGTCAGAGACTCATGGTTCAATCTCGTTTCAACAATCCTAATTCTTCCTCGACTCGTTACATCAATGGAGTCGATGCATTCCGTAAGATCCTCAATGCCGATGGTCACCGAGGCTTGTATCGAGGTTTTGGGATATCGATTTTGACATACGCACCATCGAATGCAGTGTGGTGGGCTTCTTATTATGTAGCACAGCGGTTGGTATGGGGCGGAATTGGATGCTATTACTCAAAGAAGCTTGATGAAGGCAATGAAAATGGAGGTTCAAACGTTTACAGACCGGACTCCAAGACAGTGATCGCAGTACAGGGTGCGAGCGCAGCCATGGCGGGGAGTATCTCGGCTCTGATAACAATGCCGCTCGATACAATCAAGACGAGATTGCAAGTTTTGGATGGGGATGAGAATGGTAGACGAGGGCCAACAATTGGACAGACATTGAGAAATCTGGTGAGGGAAGGTGGGTGGACAGCGTGCTACCGAGGGTTGGCGCCGCGATGCGCATCGATGTCGATGTCTGCAACAACAATGATCACTACATATGAGTTCTTGAAACGGCTATCAACCAAGAATCGAGAGGGATTAACAAGCTGA 1041 49.38 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAHSQLSCIRTAFHLVRHEGFRALYRGFGTSLMGTIPARALYMGALEFTKSYVGTATVRVGFPEATAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQSRFNNPNSSSTRYINGVDAFRKILNADGHRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCYYSKKLDEGNENGGSNVYRPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWTACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNREGLTS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5800205 5801245 - CmaCh17G007010.1 Cma17g00701 312596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00701 346 Pfam Mitochondrial carrier protein 126 217 IPR018108 -
Cma17g00701 346 Pfam Mitochondrial carrier protein 251 340 IPR018108 -
Cma17g00701 346 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Cma17g00701 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Cma17g00701 346 SUPERFAMILY Mitochondrial carrier 23 333 IPR023395 -
Cma17g00701 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 216 IPR018108 -
Cma17g00701 346 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 342 - -
Cma17g00701 346 Gene3D Mitochondrial carrier domain 30 344 IPR023395 -
Cma17g00701 346 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 342 - -
Cma17g00701 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 247 336 IPR018108 -
Cma17g00701 346 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Cma17g00701 346 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01712 Cma-Chr1:11645103 Cma17g00701 Cma-Chr17:5800205 1.92E-162 dispersed
Cma14g01569 Cma-Chr14:11759598 Cma17g00701 Cma-Chr17:5800205 9.51E-73 dispersed
Cma15g00225 Cma-Chr15:1120065 Cma17g00701 Cma-Chr17:5800205 3.53E-83 dispersed
Cma15g00239 Cma-Chr15:1166966 Cma17g00701 Cma-Chr17:5800205 4.31E-48 dispersed
Cma17g00701 Cma-Chr17:5800205 Cma02g00594 Cma-Chr2:3509587 4.29E-26 dispersed
Cma17g00701 Cma-Chr17:5800205 Cma08g00787 Cma-Chr8:4743887 0 wgd
Cma17g00701 Cma-Chr17:5800205 Cma09g00357 Cma-Chr9:1469887 2.17E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00701 K15121 - csv:101210602 603.979