Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00710 ATGGCAGCTCCCACGGCTGAAGAAGAAGTTAACGATTCCTTTACCACTTCCCACACGGTGATCGCCATTAGCAGGGACAAGAACAGTCAATATGCGGTTAAATGGGCTGTAGAACACCTGTTCAACAGGAAGAACTCCGGCGATTGCATCCTCATCCATGTTCGTAGCCAGAGCATGCATCCCCAGGATGCCGATACGGTGCCTAAGGAGTATCGTCCACCGACTGAAGCTGAGTTGCATCAGTTCTTCCTTCCCTTCCGCGGATTCTGTGCACGAAAAGGAATAGTTGCAAAGGAGATAATCATACACGACATCGATGTTCCTAGTGCACTTATTGACTATGTCAGTAAACACTCCATTAGCAATATTGTTGTGGGTGCTTCCAACCGGAATGTTATTTTGAGGAAGTTCAAGCATCCCGATGTCCCAACGTGCTTACTCAAATCAACTCCAGAATCATGCTCTGTATATGTCATAGCTAGAGGAAAGGTTCATACTAAGAGACTGAAAAAGAAACCGAAGTCACAAACTGATAGTACAGAAACACCATCTAGAGCTCCACATTTGAGCAGGTCTATATCAAAAATACAAAAATCAGCATACCCTAATATCTCAGGACTCTCTGAAGATAAAAGCAGTTCTGGCACCAGTTATGATTCAATGTCAGGCATCAGTGACTATTCGGGGCCTTTCAAATCATTTGAAACATCCTTTGAGAACTTAGATTCTTTCACAACCTCCTCAGAGACTAATTCGAGGAGCTTTGTGTCCTCTAACACCCCATCTTCCATAGAAGCTGAGATGAGAAAGTTGAGGTTGGAACTCAAACAAACGATGGAAATGTATGAATTAGCTTCCAATGAAGCTATAATAGCAAAACAAAAGGCAAAAGAAATGCAACAGTTGAAGATGGAATTGGTAGAAGACCAAAAACTTGAGCGTAGTAAATCTTCAGAAGAGGCTATAACGACATTGGTCGAGTTTGAGAAGCAGAAGAACAAGGCTGCGACAGAAGCAGCTGTAATGGCACAGAAGTTGGCAGAATTAGAGACCCAGAAAAAACGAGTTATTGTTGAAAATAAAGCTAGGATTGAGGCAGAGGAGATGAAGAAAGCAATTGATTTATTTGAACGCAGTAATGTCTGCTATAAACGATACAGAATTGACGAGATCGAAGCTGCAACAGATCATTTTAATGAGTCTAATAAGATTGGTGAAGGGGGATATGGACCTGTTTACCAAGCCATACTCGATCATACTTCTGTTGCCATTAAGATCTTGAGACCAGATAGATCTCATGGGCAGAAACAATTCCAGCAAGAGATTGAGGTTCTAAGCCGCATGAGGCATCCACACATGGTTCTCCTCTTAGGTGCCTGCCCAGAAAACGGTTGTCTCGTTTATGAATATATGGAAAACGGGAGCTTAGAAGACCGTCTTTTCCGAAAAGATAACACTCCTCCAATCCCTTGGAGTACCCGTTTCAGGATAGCTGCTGACATTGCCACTGCCTTACTCTTCCTTCACCAAATGAAGCCAGAACCTGTGGTGCATCGCGATCTCAAGCCAGCCAACATTCTCTTAGATCACAACTACGTGGGCAAAATAGGTGATGTGGGTTTGGCCAGGCTAGTTCCACCATCGGTTGCCGATAGCGTCACTCAATATCACATGACTGCTGCAGCTGGAACATTCTGTTACATTGATCCAGAATATCAACAAACAGGAATGTTGGGTGTGAAGTCAGATATTTACTCATTTGGTGTTCTGCTACTCCAGCTCATCACTGCAAGGTCACCGATGGGTCTTTCATATCAGGTCGAGGAGGCCATTGAACACGGCACATTTCCACAGGCACTTGATCCTACAGTTACAGATTGGCCTATTGAAGATACTCTTGGACTCGCTCAATTAGCCCTGCAGTGCTGTGAGCTAAGGAAAAGAGACAGGCCTGATCTCCATACAGTTCTATTGCCCGAACTGGTCCGGTTAAAAAATCTAGGATTGAGCAAAATGCCACTAAAGGGAAAACTCCCAGATGTCTGCGAATCATGTGATCGACCGGCCTCTAACTCAGCTCCAAAATTAAGGAGATCAGGACATGAGGTTAGTTGA 2115 43.92 MAAPTAEEEVNDSFTTSHTVIAISRDKNSQYAVKWAVEHLFNRKNSGDCILIHVRSQSMHPQDADTVPKEYRPPTEAELHQFFLPFRGFCARKGIVAKEIIIHDIDVPSALIDYVSKHSISNIVVGASNRNVILRKFKHPDVPTCLLKSTPESCSVYVIARGKVHTKRLKKKPKSQTDSTETPSRAPHLSRSISKIQKSAYPNISGLSEDKSSSGTSYDSMSGISDYSGPFKSFETSFENLDSFTTSSETNSRSFVSSNTPSSIEAEMRKLRLELKQTMEMYELASNEAIIAKQKAKEMQQLKMELVEDQKLERSKSSEEAITTLVEFEKQKNKAATEAAVMAQKLAELETQKKRVIVENKARIEAEEMKKAIDLFERSNVCYKRYRIDEIEAATDHFNESNKIGEGGYGPVYQAILDHTSVAIKILRPDRSHGQKQFQQEIEVLSRMRHPHMVLLLGACPENGCLVYEYMENGSLEDRLFRKDNTPPIPWSTRFRIAADIATALLFLHQMKPEPVVHRDLKPANILLDHNYVGKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHGTFPQALDPTVTDWPIEDTLGLAQLALQCCELRKRDRPDLHTVLLPELVRLKNLGLSKMPLKGKLPDVCESCDRPASNSAPKLRRSGHEVS 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5869007 5872957 + CmaCh17G007100.1 Cma17g00710 312605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00710 704 Gene3D HUPs 7 160 IPR014729 -
Cma17g00710 704 Pfam Universal stress protein family 20 133 IPR006016 -
Cma17g00710 704 ProSiteProfiles Protein kinase domain profile. 398 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00710 704 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 18 672 - -
Cma17g00710 704 Coils Coil 268 288 - -
Cma17g00710 704 SUPERFAMILY Protein kinase-like (PK-like) 380 657 IPR011009 -
Cma17g00710 704 Coils Coil 332 352 - -
Cma17g00710 704 SMART serkin_6 398 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00710 704 CDD STK_N 19 162 - -
Cma17g00710 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Cma17g00710 704 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 158 - -
Cma17g00710 704 MobiDBLite consensus disorder prediction 684 704 - -
Cma17g00710 704 MobiDBLite consensus disorder prediction 244 263 - -
Cma17g00710 704 MobiDBLite consensus disorder prediction 167 192 - -
Cma17g00710 704 Gene3D Transferase(Phosphotransferase) domain 1 471 667 - -
Cma17g00710 704 Coils Coil 292 312 - -
Cma17g00710 704 PANTHER OS02G0152300 PROTEIN 18 672 - -
Cma17g00710 704 Pfam Protein kinase domain 398 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00710 704 Gene3D Phosphorylase Kinase; domain 1 376 470 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00710 Cma-Chr17:5869007 Cma12g00277 Cma-Chr12:1436928 0 dispersed
Cma05g01403 Cma-Chr5:10466879 Cma17g00710 Cma-Chr17:5869007 1.45E-145 transposed
Cma17g00710 Cma-Chr17:5869007 Cma08g00785 Cma-Chr8:4725043 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69238 PF00069 Pkinase 8.60E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00710 - - bhj:120085014 1171.76