Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00712 ATGGCAGGTTTGGCTCCAGAAGGATCCCAATTTGATTCTCGTCAATATGATACTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTTTTTACCTCATATGATGAAGTTTATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAACCTCCTTAGAGGCATTTATGCCTATGGTTTCGAGAAGCCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTTTGCTCTGGAATATTGCAGCAACTTGATTATGGTCTAGTCCAGTGCCAGGCTTTAGTTTTGGCTCCAACTAGGGAGCTTGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTACATGCTTGTGTGGGAGGGACAAGCGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCACGTTGTAGTTGGAACACCTGGCCGTGTGTTTGACATGTTAAGGAGGCAATCTCTTCGTCCGGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATTTATGACATTTTCCAGCTGTTGCCATCAAAAATTCAAGTTGGGGTGTTCTCAGCCACAATGCCACCCGAAGCTTTGGAGATTACTAGAAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTATGTAAATGTTGACAAGGAAGATTGGAAACTTGAAACGTTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTCATCTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACTGTATCGGCCACCCACGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGCTCGTCTCGTGTTCTTATCACAACTGACTTGTTAGCTCGAGGTATTGATGTTCAGCAAGTCTCCCTTGTTATAAATTATGATTTGCCAACCCAACCAGAGAATTACCTTCATCGAATTGGTCGAAGTGGGCGTTTCGGAAGAAAAGGTGTGGCCATTAATTTTGTTACAAGCGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCGTTGAGGAGCTGCCAGCCAATGTTGCTGATCTCCTATGA 1242 42.91 MAGLAPEGSQFDSRQYDTKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDERMLFDIQKFYNVVVEELPANVADLL 413
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
17 5877920 5880898 + CmaCh17G007120.1 Cma17g00712 312607
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00712 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Cma17g00712 413 Gene3D - 30 248 IPR027417 -
Cma17g00712 413 CDD DEADc_EIF4A 45 242 - -
Cma17g00712 413 CDD SF2_C_DEAD 253 383 - -
Cma17g00712 413 PANTHER RNA HELICASE 22 413 - -
Cma17g00712 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-11 22 413 - -
Cma17g00712 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Cma17g00712 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Cma17g00712 413 SMART ultradead3 59 256 IPR014001 -
Cma17g00712 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Cma17g00712 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Cma17g00712 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Cma17g00712 413 Gene3D - 249 413 IPR027417 -
Cma17g00712 413 SMART helicmild6 293 374 IPR001650 -
Cma17g00712 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00256 Cma-Chr1:1186484 Cma17g00712 Cma-Chr17:5877920 8.92E-180 dispersed
Cma05g00423 Cma-Chr5:1908259 Cma17g00712 Cma-Chr17:5877920 0 dispersed
Cma14g00966 Cma-Chr14:5054263 Cma17g00712 Cma-Chr17:5877920 2.87E-179 dispersed
Cma14g02025 Cma-Chr14:14149081 Cma17g00712 Cma-Chr17:5877920 1.36E-84 dispersed
Cma14g00252 Cma-Chr14:1097817 Cma17g00712 Cma-Chr17:5877920 1.71E-65 transposed
Cma01g00052 Cma-Chr1:206398 Cma17g00712 Cma-Chr17:5877920 0 wgd
Cma14g01252 Cma-Chr14:9927541 Cma17g00712 Cma-Chr17:5877920 0 wgd
Cma17g00712 Cma-Chr17:5877920 Cma08g00783 Cma-Chr8:4715727 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00712 K03257 - csv:101221456 810.061