Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma17g00712 | ATGGCAGGTTTGGCTCCAGAAGGATCCCAATTTGATTCTCGTCAATATGATACTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTTTTTACCTCATATGATGAAGTTTATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAACCTCCTTAGAGGCATTTATGCCTATGGTTTCGAGAAGCCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTTTGCTCTGGAATATTGCAGCAACTTGATTATGGTCTAGTCCAGTGCCAGGCTTTAGTTTTGGCTCCAACTAGGGAGCTTGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTACATGCTTGTGTGGGAGGGACAAGCGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCACGTTGTAGTTGGAACACCTGGCCGTGTGTTTGACATGTTAAGGAGGCAATCTCTTCGTCCGGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATTTATGACATTTTCCAGCTGTTGCCATCAAAAATTCAAGTTGGGGTGTTCTCAGCCACAATGCCACCCGAAGCTTTGGAGATTACTAGAAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTATGTAAATGTTGACAAGGAAGATTGGAAACTTGAAACGTTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTCATCTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACTGTATCGGCCACCCACGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGCTCGTCTCGTGTTCTTATCACAACTGACTTGTTAGCTCGAGGTATTGATGTTCAGCAAGTCTCCCTTGTTATAAATTATGATTTGCCAACCCAACCAGAGAATTACCTTCATCGAATTGGTCGAAGTGGGCGTTTCGGAAGAAAAGGTGTGGCCATTAATTTTGTTACAAGCGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCGTTGAGGAGCTGCCAGCCAATGTTGCTGATCTCCTATGA | 1242 | 42.91 | MAGLAPEGSQFDSRQYDTKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDERMLFDIQKFYNVVVEELPANVADLL | 413 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 5877920 | 5880898 | + | CmaCh17G007120.1 | Cma17g00712 | 312607 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma17g00712 | 413 | Pfam | Helicase conserved C-terminal domain | 266 | 374 | IPR001650 | - | |
| Cma17g00712 | 413 | Gene3D | - | 30 | 248 | IPR027417 | - | |
| Cma17g00712 | 413 | CDD | DEADc_EIF4A | 45 | 242 | - | - | |
| Cma17g00712 | 413 | CDD | SF2_C_DEAD | 253 | 383 | - | - | |
| Cma17g00712 | 413 | PANTHER | RNA HELICASE | 22 | 413 | - | - | |
| Cma17g00712 | 413 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-11 | 22 | 413 | - | - | |
| Cma17g00712 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | IPR001650 | - | |
| Cma17g00712 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | IPR014001 | - | |
| Cma17g00712 | 413 | SMART | ultradead3 | 59 | 256 | IPR014001 | - | |
| Cma17g00712 | 413 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | IPR000629 | - | |
| Cma17g00712 | 413 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 40 | 68 | IPR014014 | GO:0003724 | |
| Cma17g00712 | 413 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | IPR027417 | - | |
| Cma17g00712 | 413 | Gene3D | - | 249 | 413 | IPR027417 | - | |
| Cma17g00712 | 413 | SMART | helicmild6 | 293 | 374 | IPR001650 | - | |
| Cma17g00712 | 413 | Pfam | DEAD/DEAH box helicase | 65 | 226 | IPR011545 | GO:0003676|GO:0005524 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00256 | Cma-Chr1:1186484 | Cma17g00712 | Cma-Chr17:5877920 | 8.92E-180 | dispersed | |
| Cma05g00423 | Cma-Chr5:1908259 | Cma17g00712 | Cma-Chr17:5877920 | 0 | dispersed | |
| Cma14g00966 | Cma-Chr14:5054263 | Cma17g00712 | Cma-Chr17:5877920 | 2.87E-179 | dispersed | |
| Cma14g02025 | Cma-Chr14:14149081 | Cma17g00712 | Cma-Chr17:5877920 | 1.36E-84 | dispersed | |
| Cma14g00252 | Cma-Chr14:1097817 | Cma17g00712 | Cma-Chr17:5877920 | 1.71E-65 | transposed | |
| Cma01g00052 | Cma-Chr1:206398 | Cma17g00712 | Cma-Chr17:5877920 | 0 | wgd | |
| Cma14g01252 | Cma-Chr14:9927541 | Cma17g00712 | Cma-Chr17:5877920 | 0 | wgd | |
| Cma17g00712 | Cma-Chr17:5877920 | Cma08g00783 | Cma-Chr8:4715727 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma17g00712 | K03257 | - | csv:101221456 | 810.061 |