Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00714 ATGAAAATCGAGTCGATGAGACGGGGAAGAATAAGGGAGAGGATCCGTCGAAGCCATCTTTATACGTTTGGTTGCCTCCGGGCAGACAGTGCACGGGAGGCTGACGATTCGAATCCTCTAACAGGACCTGGCTTCTCACGAACTGTTTGTTGTAACCAACCTCATCTCCATGAGAGGAATCCGTTGAGATACTGCACGAATTACATATCCACGACAAAGTATAATGTTCTTTCTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCCGAAGGGTTGCCAATGTGTACTTTCTTATGGCTGCATTGTTATCGCTCACACCGGTTGCCCCATTTTCTGCCATGAGCATGATTGCACCATTGGTATTTGTTGTTGGACTCAGTATGGCGAAAGAAGCTCTAGAGGACTGGCGTCGATTTGTGCAGGATATGAAGGTTAATCTCAGGAAAGTTTGTGTCCATAAAGGGGAAGGTGTTTTTGGTTATAGACCATGGCACAAGATTCGAGTAGGAGATATACTGAAAGTAGAGAAGGATCAATTCTTTCCAGCCGATCTGCTTCTCTTGTCATCATGCTATGAGGATGGTATATGCTACGTCGAAACAATGAATTTGGATGGCGAAACTAATCTCAAAGTAAAGAGATCTTTGGAAGTAACCTTACCGTTGGATGATGATGCAACTTTCAAAGATTTTACTGGAAAAATTTACTGTGAAGATCCCAACCCGAATCTTTACACATTTGTAGGTAACTTCGAGTATGATCGGCAGATTTATCCTCTTGATCCTAGTCAGATTCTCCTTAGAGATTCAAAATTGAGGAATACAGCTTATGCCTATGGGGTGGTGATATTTACTGGACATGATAGCAAAGTCATGCAGAATGCTACAAAATCTCCTTCGAAAAGAAGTGGAATAGAGAGAAAAATGGACAAAATTATTTACATCCTTTTTACTCTCCTTATATTGATCTCATCATTCAGCTCAATAGGTTTTGCTGTGAAAACAAAGTACGAAATGACAGATTGGTGGTATTTACGAACTACTGGCGATGATCATGATCCATTGTACAACCCTCGTAAGCCGACCTTATCAGGGCTCATACATTTAATCACAGCTCTTATACTTTATGGATATTTGATACCCATCTCGTTATATGTTTCCATCGAGATAGTTAAGGTTCTGCAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGAAGAGACTGGCAATCCAGCTCGAGCTCGAACATCAAACTTGAATGAGGAGTTGGGTCAGGTGGACACAATCCTATCTGACAAAACAGGCACCTTGACTTGCAATCAGATGGACTTTCTGAAATGTTCCATTGCTGGCACTGCATATGGGGTTAAAGCTAGTGAGGTTGAACTTGCAGCTGCAAGGCAGATGGCATATGATCTTGAGGAGGATGGAGAATATTCTGATGTTTATGGGCAAAAGAATAGCCGACAGCCTTCTATGGCAAATAGCAGAAAAGGGTCCGAGATTGAATTGGAGACTGTCGTTACTTCGGGTGATGGCAAGGATCAGAAGTCTGCCATAAAGTATTTTAGTTTCGAGGACAGCCGCCTAACTGGTGGAAACTGGTTGAATGAACCCAATTCTGATGTCATTCTATTATTCTTCCGAATTTTAGGAATTTGTCACACTGCGATTCCCGAGCTGAACGAGGAGACTGGTGTTTATACATACGAGGCAGAGTCCCCAGATGAAGGCGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAATTTTGTAAGAGAACACAGTCAACCTTGGTTGTCCGTGAAAAATATCCTTCACCTACCCAAATAGTTGAAAGGGAATACAAAATTTTGAATCTTTTGGATTTCACTAGCAAGAGAAAGAGAATGTCCGTAATTATTAGGGACGAGTTCGGCCAGATAATTCTTCTCTGCAAAGGTGCTGATAGCATCATCTTCGATCGACTAGCAAAGAACGGAAGAATGTATGAGGAAGCTACCACAAGGCATTTGAATGAATATGGAGAAGCAGGGTTGCGAACTCTGGCACTTGCTTATAGGAAGCTTGAGGAGTCCGAATATAACGCTTGGAACAATGAGTTTCAAAAGGCTAAGACATCCATTGGAGGAGATAGAGATACAATGCTTGAGCGAGTATCCGACCTCATGGAGCGAGAATTAACCCTTGTTGGTGCTACTGCAGTGGAGGATAAGTTGCAGAATGGGGTCCCCCAATGCATAGACAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCCATCAACATAGGATATGCGTGCAGTTTACTGCGACAGGGAATGAAGCGGATCTGCATATCGTCGAACTCGGATTCCTTAGCACAGGATGGCAAAGAGGCCATGAAGGCACATATTTTGAATCAAATCACCAACGCCTCACAAATGATCAATCTGGAAAATGATCCACATGCTGCATTTGCTTTAATCATTGATGGGAAGACTCTAACCTATGCCCTTGAGGACGATATGAAGCTCCATTTCCTTGGGCTTGCTGTTGATTGTGCGTCGGTCATTTGCTGTCGAGTCTCCCCTAGACAGAAGGCTCTGATAACAAGGTTAGTGAAAGAAGGTACTGGGAAAACCACTTTAGCAATTGGCGATGGTGCAAACGATGTAGGAATGATTCAAGAGGCCGATATTGGTGTCGGTATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCTATTGCTCAATTTCGATTTCTGGAAAGGCTTCTGGTAGTCCATGGCCATTGGTGCTACAAGAGGATAGCACAAATGATATGCTACTTCTTCTACAAGAATATTGCATTTGGATTAACGCTGTTCTACTTTGAAGCATATGCTGGATTTTCTGGGCAATCAATCTATGATGATTTCTACATGTTATCATTTAATGTCATACTCACCTCATTGCCTGTAATTTCCCTTGGAGTTTTTGAGCAAGATGTTTCTTCTGAGGTCTGCCTCCAGTTCCCTGCACTGTATCAGCAAGGACCCAGAAACTTGTTCTTCGACTGGCCTCGGATTTTCGGATGGATGGGGAACGCTCTCTACTCCTCTCTAGTTACATTCTTCCTCAACCTCATCATCTTCTACGATCAGGCATTCCGCTCAGGTGGCCAAACTGCCGATATGACTACAGTGGGAACGACCATGTTTACGTGCATCATATGGGCAGTAAATTGCCAGATTGCTCTCACAATGAGCCATTTCACCTGGATCCAACACCTTTTCGTGTGGGGTAGTATCGCGATGTGGTACTTGTTCATCTTACTCTATGGAATGGTTTTATCCTCTGGGAATGCCTATAAAATCTTTGTTGAAGCACTAAGTCCTGCCCCTGTTTACTGGATAGCCACCATTTTAGTAACAATTACCTGTAATCTCCCATATCTTGCCCACATATCCTTCCAGAGAAGCTTCCATCCATTGGATCATCAAATTATTCAAGAAATCAAATACTACAGAAAGGATGTTGAAGATTCACACATGTGGACCAGAGAAAGATCAAAAGCAAGGCAAAAGACAAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATCAGACAGCTGAAAGGAAAGCTGCAAAAGAAACATTCTTCCCTGGGCATGCCTCCTCCAAATGCTTCTGTTATATCATGA 3705 42.7 MKIESMRRGRIRERIRRSHLYTFGCLRADSAREADDSNPLTGPGFSRTVCCNQPHLHERNPLRYCTNYISTTKYNVLSFLPKALFEQFRRVANVYFLMAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKVCVHKGEGVFGYRPWHKIRVGDILKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLPLDDDATFKDFTGKIYCEDPNPNLYTFVGNFEYDRQIYPLDPSQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSGIERKMDKIIYILFTLLILISSFSSIGFAVKTKYEMTDWWYLRTTGDDHDPLYNPRKPTLSGLIHLITALILYGYLIPISLYVSIEIVKVLQASFINQDINMYCEETGNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVKASEVELAAARQMAYDLEEDGEYSDVYGQKNSRQPSMANSRKGSEIELETVVTSGDGKDQKSAIKYFSFEDSRLTGGNWLNEPNSDVILLFFRILGICHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVREKYPSPTQIVEREYKILNLLDFTSKRKRMSVIIRDEFGQIILLCKGADSIIFDRLAKNGRMYEEATTRHLNEYGEAGLRTLALAYRKLEESEYNAWNNEFQKAKTSIGGDRDTMLERVSDLMERELTLVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISSNSDSLAQDGKEAMKAHILNQITNASQMINLENDPHAAFALIIDGKTLTYALEDDMKLHFLGLAVDCASVICCRVSPRQKALITRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWPRIFGWMGNALYSSLVTFFLNLIIFYDQAFRSGGQTADMTTVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSIAMWYLFILLYGMVLSSGNAYKIFVEALSPAPVYWIATILVTITCNLPYLAHISFQRSFHPLDHQIIQEIKYYRKDVEDSHMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKHSSLGMPPPNASVIS 1234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5883351 5889270 - CmaCh17G007140.1 Cma17g00714 312609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00714 1234 Gene3D - 124 297 - -
Cma17g00714 1234 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 860 969 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma17g00714 1234 SUPERFAMILY Calcium ATPase, transmembrane domain M 59 1160 IPR023298 -
Cma17g00714 1234 Pfam Phospholipid-translocating P-type ATPase C-terminal 916 1164 IPR032630 -
Cma17g00714 1234 Pfam Phospholipid-translocating ATPase N-terminal 51 116 IPR032631 -
Cma17g00714 1234 SFLD p-type atpase 415 939 IPR044492 -
Cma17g00714 1234 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 64 1172 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma17g00714 1234 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Cma17g00714 1234 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 531 695 IPR023299 GO:0000166
Cma17g00714 1234 SFLD C1.7: P-type atpase like 415 939 - -
Cma17g00714 1234 CDD P-type_ATPase_APLT_Dnf-like 67 1047 - -
Cma17g00714 1234 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 1226 - -
Cma17g00714 1234 SUPERFAMILY HAD-like 419 932 IPR036412 -
Cma17g00714 1234 Pfam Cation transport ATPase (P-type) 555 658 - -
Cma17g00714 1234 Gene3D - 428 440 IPR023214 -
Cma17g00714 1234 Gene3D - 441 462 IPR023299 GO:0000166
Cma17g00714 1234 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 6 1226 - -
Cma17g00714 1234 Gene3D - 599 732 IPR023299 GO:0000166
Cma17g00714 1234 SUPERFAMILY Calcium ATPase, transduction domain A 151 294 IPR008250 -
Cma17g00714 1234 Gene3D - 733 928 IPR023214 -
Cma17g00714 1234 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Cma17g00714 1234 PRINTS P-type cation-transporting ATPase superfamily signature 888 907 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00714 Cma-Chr17:5883351 Cma18g00030 Cma-Chr18:123057 0 dispersed
Cma17g00714 Cma-Chr17:5883351 Cma08g00781 Cma-Chr8:4707590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00714 K01530 - csv:101221220 2306.56