Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00719 | ATGGAATCTTGGAATAATTTCAAACCACTGATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGGGATTCAGATGATGATGAAAGGGAATTTTTTGTCTCAACAACAACAACAACATCAACACCAAGTTTTAATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCTAATCACTATTTAGCTCCTCAATCCCAACACCCACAGCCGCCACCGCCTCCGCCTCCTCCGAAGAAGAAACGCAACCTCCCCGGAAACCCCGACCCAGATGCAGAAGTGATAGCGTTATCGCCGAGAACGCTAATGGCGACGAATCGATTCGTGTGCGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAGCTACATAGAAGAGGGCACAATCTACCATGGAAGCTGAAGCAAAGATCAAACAAAGAAGTGGTAAAGAAGAAGGTGTATGTGTGCCCAGAGAGCAGCTGCGTCCACCATGACCCATCAAGAGCTCTTGGAGACCTCACAGGTATCAAAAAGCACTTCTACAGAAAGCATGGCGAAAAGAAGTGGAAATGCGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAAGGAGTACAGATGTGACTGTGGAACACTGTTTTCAAGGAGAGACAGTTTTATAACACATAGAGCTTTTTGCGATGCATTGGCGGATGAAAGTGCGAGATCAGCTATGGCATTAAACCCGATTATGTCTTCTTATAATAATAATAATAATAATAATTTTGTTATCAAACGGGACTTTAGTAATAGTAACAATATGAGGGCGGAGATTCCACCGTGGCTACATTCGAATGATCTTCGAGGGGAAATCTTTATTGGGAGTTGTCAAGACGAGCATCCGCATCAAAATCATGAAACCCTAAACCCGAACGGGCACGGCCACGGGCACGGCCACGGGTGCGGGGCGAGTATTGGACTTCCTCCTCCTTCTTCATATCAGTGTTCTTCGGTTTCTTCTCCTCATATTTCAGCCACTGCATTGCTTCAGAAGGCAGCTCAAATGGGTGCCACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCAAAGGCCCCACAAGATGGTTCACGTGTCTACAGGTGATTATGGGCATATTGGAGGAGGAGCGGTGAGTTGTAGTAGTAGTTGTACCGATTACGGGCACAAAGCTGCGGCGGTTTCAGCTTCGGAACCCGCCACTTTTCTTCATGACATGATAAATTCCCTCTCTTCTGCTTCAGCTTCTCATCCCTTCCTACAAGATTCCTCCTTTAACGACGTCACCGCGTTCCCCGCCATGCATCACCACATCGTTCCCGCTACTGCCACCACCACCGTCACCGCCGCTTCGGGCGGTCGAAGCGACGGTTTAACGAGGGATTTTTTGGGGCTTCGCCCTCTTTCCCATGGAGATATTCTAAGCCTTACTGGTTTTGGGAACTGCATTGTTCCTAATTCCTCCAATCTTCAAAGTCAAATCCAGAAGCCATGGCAGGGATAG | 1584 | 46.4 | MESWNNFKPLIEEEEEEEEEEEEEEEEGIQMMMKGNFLSQQQQQHQHQVLMDENLSNLTSASGEATASVSSANHYLAPQSQHPQPPPPPPPPKKKRNLPGNPDPDAEVIALSPRTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFYRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPIMSSYNNNNNNNFVIKRDFSNSNNMRAEIPPWLHSNDLRGEIFIGSCQDEHPHQNHETLNPNGHGHGHGHGCGASIGLPPPSSYQCSSVSSPHISATALLQKAAQMGATMSSTTTTSGSMQRPHKMVHVSTGDYGHIGGGAVSCSSSCTDYGHKAAAVSASEPATFLHDMINSLSSASASHPFLQDSSFNDVTAFPAMHHHIVPATATTTVTAASGGRSDGLTRDFLGLRPLSHGDILSLTGFGNCIVPNSSNLQSQIQKPWQG | 527 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 5913485 | 5917042 | + | CmaCh17G007190.1 | Cma17g00719 | 312614 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00719 | 527 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 57 | 507 | - | - | |
Cma17g00719 | 527 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
Cma17g00719 | 527 | MobiDBLite | consensus disorder prediction | 34 | 79 | - | - | |
Cma17g00719 | 527 | SUPERFAMILY | beta-beta-alpha zinc fingers | 121 | 219 | IPR036236 | - | |
Cma17g00719 | 527 | Coils | Coil | 7 | 32 | - | - | |
Cma17g00719 | 527 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 57 | 507 | - | - | |
Cma17g00719 | 527 | Gene3D | Classic Zinc Finger | 101 | 174 | - | - | |
Cma17g00719 | 527 | MobiDBLite | consensus disorder prediction | 80 | 97 | - | - | |
Cma17g00719 | 527 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 124 | 144 | IPR013087 | - | |
Cma17g00719 | 527 | Gene3D | Classic Zinc Finger | 177 | 256 | - | - | |
Cma17g00719 | 527 | SMART | c2h2final6 | 199 | 219 | IPR013087 | - | |
Cma17g00719 | 527 | SMART | c2h2final6 | 164 | 194 | IPR013087 | - | |
Cma17g00719 | 527 | SMART | c2h2final6 | 122 | 144 | IPR013087 | - | |
Cma17g00719 | 527 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 122 | 144 | IPR013087 | - | |
Cma17g00719 | 527 | Pfam | Zinc finger, C2H2 type | 122 | 144 | IPR013087 | - | |
Cma17g00719 | 527 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma17g00719 | Cma-Chr17:5913485 | Cma03g00762 | Cma-Chr3:5974951 | 2.01E-114 | dispersed | |
Cma01g00059 | Cma-Chr1:264054 | Cma17g00719 | Cma-Chr17:5913485 | 1.60E-125 | wgd | |
Cma14g01261 | Cma-Chr14:9995680 | Cma17g00719 | Cma-Chr17:5913485 | 7.02E-120 | wgd | |
Cma17g00719 | Cma-Chr17:5913485 | Cma08g00775 | Cma-Chr8:4677786 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36669 | PF00096 | zf-C2H2 | 0.0054 | CL0361 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00719 | K25870 | - | csv:101220200 | 651.358 |