Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00719 ATGGAATCTTGGAATAATTTCAAACCACTGATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGGGATTCAGATGATGATGAAAGGGAATTTTTTGTCTCAACAACAACAACAACATCAACACCAAGTTTTAATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCTAATCACTATTTAGCTCCTCAATCCCAACACCCACAGCCGCCACCGCCTCCGCCTCCTCCGAAGAAGAAACGCAACCTCCCCGGAAACCCCGACCCAGATGCAGAAGTGATAGCGTTATCGCCGAGAACGCTAATGGCGACGAATCGATTCGTGTGCGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAGCTACATAGAAGAGGGCACAATCTACCATGGAAGCTGAAGCAAAGATCAAACAAAGAAGTGGTAAAGAAGAAGGTGTATGTGTGCCCAGAGAGCAGCTGCGTCCACCATGACCCATCAAGAGCTCTTGGAGACCTCACAGGTATCAAAAAGCACTTCTACAGAAAGCATGGCGAAAAGAAGTGGAAATGCGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAAGGAGTACAGATGTGACTGTGGAACACTGTTTTCAAGGAGAGACAGTTTTATAACACATAGAGCTTTTTGCGATGCATTGGCGGATGAAAGTGCGAGATCAGCTATGGCATTAAACCCGATTATGTCTTCTTATAATAATAATAATAATAATAATTTTGTTATCAAACGGGACTTTAGTAATAGTAACAATATGAGGGCGGAGATTCCACCGTGGCTACATTCGAATGATCTTCGAGGGGAAATCTTTATTGGGAGTTGTCAAGACGAGCATCCGCATCAAAATCATGAAACCCTAAACCCGAACGGGCACGGCCACGGGCACGGCCACGGGTGCGGGGCGAGTATTGGACTTCCTCCTCCTTCTTCATATCAGTGTTCTTCGGTTTCTTCTCCTCATATTTCAGCCACTGCATTGCTTCAGAAGGCAGCTCAAATGGGTGCCACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCAAAGGCCCCACAAGATGGTTCACGTGTCTACAGGTGATTATGGGCATATTGGAGGAGGAGCGGTGAGTTGTAGTAGTAGTTGTACCGATTACGGGCACAAAGCTGCGGCGGTTTCAGCTTCGGAACCCGCCACTTTTCTTCATGACATGATAAATTCCCTCTCTTCTGCTTCAGCTTCTCATCCCTTCCTACAAGATTCCTCCTTTAACGACGTCACCGCGTTCCCCGCCATGCATCACCACATCGTTCCCGCTACTGCCACCACCACCGTCACCGCCGCTTCGGGCGGTCGAAGCGACGGTTTAACGAGGGATTTTTTGGGGCTTCGCCCTCTTTCCCATGGAGATATTCTAAGCCTTACTGGTTTTGGGAACTGCATTGTTCCTAATTCCTCCAATCTTCAAAGTCAAATCCAGAAGCCATGGCAGGGATAG 1584 46.4 MESWNNFKPLIEEEEEEEEEEEEEEEEGIQMMMKGNFLSQQQQQHQHQVLMDENLSNLTSASGEATASVSSANHYLAPQSQHPQPPPPPPPPKKKRNLPGNPDPDAEVIALSPRTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFYRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPIMSSYNNNNNNNFVIKRDFSNSNNMRAEIPPWLHSNDLRGEIFIGSCQDEHPHQNHETLNPNGHGHGHGHGCGASIGLPPPSSYQCSSVSSPHISATALLQKAAQMGATMSSTTTTSGSMQRPHKMVHVSTGDYGHIGGGAVSCSSSCTDYGHKAAAVSASEPATFLHDMINSLSSASASHPFLQDSSFNDVTAFPAMHHHIVPATATTTVTAASGGRSDGLTRDFLGLRPLSHGDILSLTGFGNCIVPNSSNLQSQIQKPWQG 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5913485 5917042 + CmaCh17G007190.1 Cma17g00719 312614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00719 527 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 57 507 - -
Cma17g00719 527 MobiDBLite consensus disorder prediction 1 107 - -
Cma17g00719 527 MobiDBLite consensus disorder prediction 34 79 - -
Cma17g00719 527 SUPERFAMILY beta-beta-alpha zinc fingers 121 219 IPR036236 -
Cma17g00719 527 Coils Coil 7 32 - -
Cma17g00719 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 57 507 - -
Cma17g00719 527 Gene3D Classic Zinc Finger 101 174 - -
Cma17g00719 527 MobiDBLite consensus disorder prediction 80 97 - -
Cma17g00719 527 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Cma17g00719 527 Gene3D Classic Zinc Finger 177 256 - -
Cma17g00719 527 SMART c2h2final6 199 219 IPR013087 -
Cma17g00719 527 SMART c2h2final6 164 194 IPR013087 -
Cma17g00719 527 SMART c2h2final6 122 144 IPR013087 -
Cma17g00719 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 144 IPR013087 -
Cma17g00719 527 Pfam Zinc finger, C2H2 type 122 144 IPR013087 -
Cma17g00719 527 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00719 Cma-Chr17:5913485 Cma03g00762 Cma-Chr3:5974951 2.01E-114 dispersed
Cma01g00059 Cma-Chr1:264054 Cma17g00719 Cma-Chr17:5913485 1.60E-125 wgd
Cma14g01261 Cma-Chr14:9995680 Cma17g00719 Cma-Chr17:5913485 7.02E-120 wgd
Cma17g00719 Cma-Chr17:5913485 Cma08g00775 Cma-Chr8:4677786 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36669 PF00096 zf-C2H2 0.0054 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00719 K25870 - csv:101220200 651.358