Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00721 ATGGAATATGACCAAGATCAGAACGAGAGCAGGTATAGAGAGAGAGAAACAATAGCCGGAATCGGCATCGGAAACAGAGATTACAGGGAGGGAAATGAAATAAAGAAAAAAAGGGACAAGAAACTCCAGCCAGAGATGAGCCCCATCACTCACCACAACCACCCCCACCACCACCACCAACTCTCCAAACCCACCGCCTCAACCCTTGCCTCCGCCACCACTCAAGCCTGCGCTGCCTGCAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATCCTCGCCCCCTATTTCCCTCACGATCGCCAACGCCAATTCCTCAACGCTCATAAACTCTTCGGCGTTAGCAACATCACCAAAATCATTAAAAACCTCGATCCATTCGAGAAAGAAGAGGCAATGCGCACCATTATTTTCCAATCCGATGTCCGATCCATGGATCCCGTTGGTGGCTGCTATCGCATCATTCGCGACCTCCAACTCCAGATCGAATACATCAAAACTGAGCTCGATTTCGTTCTCAGTCAATTGGCGCTTTGTAAGCAGCAGGCCGCCGCCGCTGCCGCCGTCGCCATTCTCGAGGCGGATCCGATGAGTGGATACGGCGGACTTGAGCATCAATTTGTGGAGGGATATGGAGGGGAAGGGTTTGTAGTCGGGGAAAATGAGAATCGGGAGACTCTGGAAGATCAAGAAGTCGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCCCTGCAATTGAAACCGGCCGGCTCTGTTCAAGATTTCCATGATATCAAGATCGATACCAATAATACTAATCACCATCATCACCATCAACAACAACAACAACAACAACAACATCTTCTTAGGTTTCAACAGGATCATCATGATCAGGATCTGGTTCATCAGAGTGAAGAAGCTATGCTGAAGATGGACAATGTGATGTTAAAAGAGTCTGACCCAATACAACAGGCTCAAGATCAAGAGCTTAAAGGTGCAGTTGACACTTTATTTACCTTCCCAACTTGTGATCCTTAG 1017 48.28 MEYDQDQNESRYRERETIAGIGIGNRDYREGNEIKKKRDKKLQPEMSPITHHNHPHHHHQLSKPTASTLASATTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSMDPVGGCYRIIRDLQLQIEYIKTELDFVLSQLALCKQQAAAAAAVAILEADPMSGYGGLEHQFVEGYGGEGFVVGENENRETLEDQEVEVWGIQDSCSSLQLKPAGSVQDFHDIKIDTNNTNHHHHHQQQQQQQQHLLRFQQDHHDQDLVHQSEEAMLKMDNVMLKESDPIQQAQDQELKGAVDTLFTFPTCDP 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5922371 5925638 + CmaCh17G007210.1 Cma17g00721 312616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00721 338 MobiDBLite consensus disorder prediction 262 282 - -
Cma17g00721 338 ProSiteProfiles LOB domain profile. 75 176 IPR004883 -
Cma17g00721 338 MobiDBLite consensus disorder prediction 28 61 - -
Cma17g00721 338 MobiDBLite consensus disorder prediction 28 51 - -
Cma17g00721 338 Pfam Lateral organ boundaries (LOB) domain 76 171 IPR004883 -
Cma17g00721 338 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 70 318 - -
Cma17g00721 338 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 70 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02746 Cma-Chr4:18460070 Cma17g00721 Cma-Chr17:5922371 5.07E-33 dispersed
Cma15g00287 Cma-Chr15:1362151 Cma17g00721 Cma-Chr17:5922371 7.76E-33 dispersed
Cma17g00721 Cma-Chr17:5922371 Cma05g00742 Cma-Chr5:4237544 5.28E-30 dispersed
Cma17g00721 Cma-Chr17:5922371 Cma08g00773 Cma-Chr8:4659704 3.10E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36670 PF03195 LOB 6.00E-35 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00721 - - cmos:111456336 464.536