Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00725 | ATGAAATCTGCGGAAGTTTCCTATGAATTTGGGACTCTGATGGGGTTTCGATTACTGTTTCTACTGTTTGAAATTTGTTTTTCTGTTGGTTCTTTCTCTGTCTGTGAAGCTGCAGATCATGCTGTCACTCCAACATCTCATGGCTTTGGCAGGAAACACCATGCTATTCAATCAGTTGATTCAAGTAGAGCTCCTAGCATTGCACTTCCACCTACCACGTCTGCTAAGAAATGGGAGCATGCTCATGCATTCTCACCATTCATCAATTTTCATAAACTACACCATTCAAGATGGAAGTTCAGATACGAAGCTCCACAACCTTCCTATCTAGCATCGCCCCCGTCTAGCAGCCTGCAAGGCCCTGCTGTATCTCAAATTCAATCACCGTTGCCATCTTCAGCAAGAGGGAGGTCGCCCGGACCCGCACCATCTCCAACAGTTCAACCCGACCACTATTATATGCCCATTCCAGCTCCTACAACTTCTCCTATGGGTTCTTACAAGAAGAAGAAGAGCATGCCACCATCACAAGCTATGATGCTACCACCTCCACCTCTTAATGGGGATTGTACAATATCGTGTACAGAGCCATTGACGTATACGCCGCCCGGGATGCCATGTGGTTGCGTGTGGCCAATTCAAGTCAAAATCAGCCTCGACGTTGCAGTATACACATTTTTCCCTTTGGTTTCAGAACTTGCAGAGGAAATTGCTGACAGTATCAGTCTGAACCATAGCCAAGTTCGAATTGTGGGAGCTGATGCTGCAAGTCAGCAGTTAGAAAAAACAACTGTTCTCATCAACTTGGTTCCAAGAAGATCAAGATTCGATCATAACACGGCCTTTTTTATATATCAGAAATTTTGGCGGAGAAAGGTATCAATCAAAGCTTCTTTGTTTGGTAGATATCAAGTACTAGATGTCAAATATCCAGGTCTTCCGCAATCTCCTCCGTCAGCACCTTTAGGTACTTCATCCATTAATGATGGTTTGAACACCAGCAATACTAATGCAGGAAATGCAATTAAACCGTTGGGAGTCGACGTGCCAAGACGAAGAAAAGAAGGGCTTGGCAGGAACATGATTGTGGTGATTACTATATCATCGTTCACTGCCTTTGTCATGTGTGTTGGACTTGCTTGGCTTTGCCTTTTGAGATGCAGAGTGCCTGCACATCATCCAGCACAAGTTCCACACAACTTGATAGCCTCAACTGCAAAACCCCCAGGCACGGCTGGATCGATAATGGCTGGAAATGATCCGGGTTCTTCGTCTATACCTCTAAACGACCATCCTATGACGTATATTGGTGCGGCAAAGCACTTCGCCTTGAAAGACATGGAGAATGCCACGGATAACTTCGACTCTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTTTACAGTGGCCGTTTAGATGATGGAAGGGAAGTGGCTGTGAAGGTTCTTAAAAGACATAATCAACATGGTATTCAGGAATTCTTGGCAGAAGTTGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAGTTGATCGGAATTTGTACCGAAGATCGAAATCGTTGCCTGGTATACGAATTGGTGCCTAATGGAAGTGTTGAATCACACTTACATGGCATTGACAAGTTAACCAGTCGACTTGACTGGGATGCCCGTTTGAAGGTTGCCCTCGGTGCTGCTCGAGGCCTAGCCTATCTGCACGAAGACTCCAATCCTCGAGTCATTCATCGAGACTTCAAAGCTAGCAACATCTTGTTGGAATGTGACTTCACACCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACACATGTTATGGGAACTTTTGGTTATCTAGCTCCAGAATATGCAATGACTGGCCACCTTCTTGTAAAGAGCGATGTCTACAGCTATGGTGTCGTCCTACTTGAGCTACTTACAGGAAGAAAGCCAGTAGACTTGTCACTTCCTCCCGGACAAGAAAATCTTGTTGCTTGGGCTCGTCCGCTTCTCACGAGCAAGGAGGGGTTAGATGTAATAACAGACCCAGCTATTAAGTCTGATATCTCTATTGATAGCTTGGCCAGAGTAGCAGCAATTGCTTCTATGTGTGTGCAACCGGAAGTGTCTCATAGACCATTTATGGGTGAGGTTGTTCAAGCCCTGAAACTCGTGTGCAGTGAGTTCGAGAAATTAACGGACCAGTTTCACAATGTTACAGCCGAGACAAACTTGAAAGGAGACAAATGTAGGATTATCGGTATCGGGTTTGATCAAGGACAGGAACTGGTTTCTTGCAGATGGCATTCATCAAATTCGAAACCATCGAGAATTGGAAGGAAAAAGCACCTGCGGCAGAAGCAAAGAAGTTTGACATGGCTTTTCTGCCAAGTTTTGGCCTGGATTTCATTAGTTTATGTTCATCCATATCACGCATTGCAAACTCTTGAAGTTCAAAGCAATTGCATTTCTGAGGCCTTTAAATTGCAAGCCAGAGATCTGTATGTCCACTGTTCTTTAAGAATCAAGACACCAGATCACTCTTTCACTAACAACTAA | 2574 | 44.33 | MKSAEVSYEFGTLMGFRLLFLLFEICFSVGSFSVCEAADHAVTPTSHGFGRKHHAIQSVDSSRAPSIALPPTTSAKKWEHAHAFSPFINFHKLHHSRWKFRYEAPQPSYLASPPSSSLQGPAVSQIQSPLPSSARGRSPGPAPSPTVQPDHYYMPIPAPTTSPMGSYKKKKSMPPSQAMMLPPPPLNGDCTISCTEPLTYTPPGMPCGCVWPIQVKISLDVAVYTFFPLVSELAEEIADSISLNHSQVRIVGADAASQQLEKTTVLINLVPRRSRFDHNTAFFIYQKFWRRKVSIKASLFGRYQVLDVKYPGLPQSPPSAPLGTSSINDGLNTSNTNAGNAIKPLGVDVPRRRKEGLGRNMIVVITISSFTAFVMCVGLAWLCLLRCRVPAHHPAQVPHNLIASTAKPPGTAGSIMAGNDPGSSSIPLNDHPMTYIGAAKHFALKDMENATDNFDSARILGEGGFGIVYSGRLDDGREVAVKVLKRHNQHGIQEFLAEVEMLSRLHHRNLVKLIGICTEDRNRCLVYELVPNGSVESHLHGIDKLTSRLDWDARLKVALGAARGLAYLHEDSNPRVIHRDFKASNILLECDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSLPPGQENLVAWARPLLTSKEGLDVITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCSEFEKLTDQFHNVTAETNLKGDKCRIIGIGFDQGQELVSCRWHSSNSKPSRIGRKKHLRQKQRSLTWLFCQVLAWISLVYVHPYHALQTLEVQSNCISEAFKLQARDLYVHCSLRIKTPDHSFTNN | 857 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 5938256 | 5944606 | + | CmaCh17G007250.1 | Cma17g00725 | 312620 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00725 | 857 | PANTHER | OS01G0750732 PROTEIN | 48 | 796 | - | - | |
Cma17g00725 | 857 | MobiDBLite | consensus disorder prediction | 111 | 176 | - | - | |
Cma17g00725 | 857 | Pfam | Protein tyrosine and serine/threonine kinase | 457 | 727 | IPR001245 | GO:0004672|GO:0006468 | |
Cma17g00725 | 857 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 576 | 588 | IPR008271 | GO:0004672|GO:0006468 | |
Cma17g00725 | 857 | SUPERFAMILY | Protein kinase-like (PK-like) | 433 | 727 | IPR011009 | - | |
Cma17g00725 | 857 | MobiDBLite | consensus disorder prediction | 111 | 134 | - | - | |
Cma17g00725 | 857 | MobiDBLite | consensus disorder prediction | 136 | 152 | - | - | |
Cma17g00725 | 857 | ProSitePatterns | Protein kinases ATP-binding region signature. | 460 | 482 | IPR017441 | GO:0005524 | |
Cma17g00725 | 857 | Gene3D | Phosphorylase Kinase; domain 1 | 425 | 529 | - | - | |
Cma17g00725 | 857 | PANTHER | OS01G0750732 PROTEIN | 48 | 796 | - | - | |
Cma17g00725 | 857 | ProSiteProfiles | Protein kinase domain profile. | 454 | 730 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma17g00725 | 857 | Gene3D | Transferase(Phosphotransferase) domain 1 | 530 | 751 | - | - | |
Cma17g00725 | 857 | CDD | STKc_IRAK | 460 | 728 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00773 | Cma-Chr8:4659704 | Cma17g00725 | Cma-Chr17:5938256 | 8.51E-85 | dispersed | |
Cma17g00725 | Cma-Chr17:5938256 | Cma19g00126 | Cma-Chr19:744556 | 0 | dispersed | |
Cma10g00720 | Cma-Chr10:3251540 | Cma17g00725 | Cma-Chr17:5938256 | 0 | wgd | |
Cma11g00695 | Cma-Chr11:3381612 | Cma17g00725 | Cma-Chr17:5938256 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69239 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-47 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00725 | - | - | csv:101219484 | 1291.17 |