Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00725 ATGAAATCTGCGGAAGTTTCCTATGAATTTGGGACTCTGATGGGGTTTCGATTACTGTTTCTACTGTTTGAAATTTGTTTTTCTGTTGGTTCTTTCTCTGTCTGTGAAGCTGCAGATCATGCTGTCACTCCAACATCTCATGGCTTTGGCAGGAAACACCATGCTATTCAATCAGTTGATTCAAGTAGAGCTCCTAGCATTGCACTTCCACCTACCACGTCTGCTAAGAAATGGGAGCATGCTCATGCATTCTCACCATTCATCAATTTTCATAAACTACACCATTCAAGATGGAAGTTCAGATACGAAGCTCCACAACCTTCCTATCTAGCATCGCCCCCGTCTAGCAGCCTGCAAGGCCCTGCTGTATCTCAAATTCAATCACCGTTGCCATCTTCAGCAAGAGGGAGGTCGCCCGGACCCGCACCATCTCCAACAGTTCAACCCGACCACTATTATATGCCCATTCCAGCTCCTACAACTTCTCCTATGGGTTCTTACAAGAAGAAGAAGAGCATGCCACCATCACAAGCTATGATGCTACCACCTCCACCTCTTAATGGGGATTGTACAATATCGTGTACAGAGCCATTGACGTATACGCCGCCCGGGATGCCATGTGGTTGCGTGTGGCCAATTCAAGTCAAAATCAGCCTCGACGTTGCAGTATACACATTTTTCCCTTTGGTTTCAGAACTTGCAGAGGAAATTGCTGACAGTATCAGTCTGAACCATAGCCAAGTTCGAATTGTGGGAGCTGATGCTGCAAGTCAGCAGTTAGAAAAAACAACTGTTCTCATCAACTTGGTTCCAAGAAGATCAAGATTCGATCATAACACGGCCTTTTTTATATATCAGAAATTTTGGCGGAGAAAGGTATCAATCAAAGCTTCTTTGTTTGGTAGATATCAAGTACTAGATGTCAAATATCCAGGTCTTCCGCAATCTCCTCCGTCAGCACCTTTAGGTACTTCATCCATTAATGATGGTTTGAACACCAGCAATACTAATGCAGGAAATGCAATTAAACCGTTGGGAGTCGACGTGCCAAGACGAAGAAAAGAAGGGCTTGGCAGGAACATGATTGTGGTGATTACTATATCATCGTTCACTGCCTTTGTCATGTGTGTTGGACTTGCTTGGCTTTGCCTTTTGAGATGCAGAGTGCCTGCACATCATCCAGCACAAGTTCCACACAACTTGATAGCCTCAACTGCAAAACCCCCAGGCACGGCTGGATCGATAATGGCTGGAAATGATCCGGGTTCTTCGTCTATACCTCTAAACGACCATCCTATGACGTATATTGGTGCGGCAAAGCACTTCGCCTTGAAAGACATGGAGAATGCCACGGATAACTTCGACTCTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTTTACAGTGGCCGTTTAGATGATGGAAGGGAAGTGGCTGTGAAGGTTCTTAAAAGACATAATCAACATGGTATTCAGGAATTCTTGGCAGAAGTTGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAGTTGATCGGAATTTGTACCGAAGATCGAAATCGTTGCCTGGTATACGAATTGGTGCCTAATGGAAGTGTTGAATCACACTTACATGGCATTGACAAGTTAACCAGTCGACTTGACTGGGATGCCCGTTTGAAGGTTGCCCTCGGTGCTGCTCGAGGCCTAGCCTATCTGCACGAAGACTCCAATCCTCGAGTCATTCATCGAGACTTCAAAGCTAGCAACATCTTGTTGGAATGTGACTTCACACCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACACATGTTATGGGAACTTTTGGTTATCTAGCTCCAGAATATGCAATGACTGGCCACCTTCTTGTAAAGAGCGATGTCTACAGCTATGGTGTCGTCCTACTTGAGCTACTTACAGGAAGAAAGCCAGTAGACTTGTCACTTCCTCCCGGACAAGAAAATCTTGTTGCTTGGGCTCGTCCGCTTCTCACGAGCAAGGAGGGGTTAGATGTAATAACAGACCCAGCTATTAAGTCTGATATCTCTATTGATAGCTTGGCCAGAGTAGCAGCAATTGCTTCTATGTGTGTGCAACCGGAAGTGTCTCATAGACCATTTATGGGTGAGGTTGTTCAAGCCCTGAAACTCGTGTGCAGTGAGTTCGAGAAATTAACGGACCAGTTTCACAATGTTACAGCCGAGACAAACTTGAAAGGAGACAAATGTAGGATTATCGGTATCGGGTTTGATCAAGGACAGGAACTGGTTTCTTGCAGATGGCATTCATCAAATTCGAAACCATCGAGAATTGGAAGGAAAAAGCACCTGCGGCAGAAGCAAAGAAGTTTGACATGGCTTTTCTGCCAAGTTTTGGCCTGGATTTCATTAGTTTATGTTCATCCATATCACGCATTGCAAACTCTTGAAGTTCAAAGCAATTGCATTTCTGAGGCCTTTAAATTGCAAGCCAGAGATCTGTATGTCCACTGTTCTTTAAGAATCAAGACACCAGATCACTCTTTCACTAACAACTAA 2574 44.33 MKSAEVSYEFGTLMGFRLLFLLFEICFSVGSFSVCEAADHAVTPTSHGFGRKHHAIQSVDSSRAPSIALPPTTSAKKWEHAHAFSPFINFHKLHHSRWKFRYEAPQPSYLASPPSSSLQGPAVSQIQSPLPSSARGRSPGPAPSPTVQPDHYYMPIPAPTTSPMGSYKKKKSMPPSQAMMLPPPPLNGDCTISCTEPLTYTPPGMPCGCVWPIQVKISLDVAVYTFFPLVSELAEEIADSISLNHSQVRIVGADAASQQLEKTTVLINLVPRRSRFDHNTAFFIYQKFWRRKVSIKASLFGRYQVLDVKYPGLPQSPPSAPLGTSSINDGLNTSNTNAGNAIKPLGVDVPRRRKEGLGRNMIVVITISSFTAFVMCVGLAWLCLLRCRVPAHHPAQVPHNLIASTAKPPGTAGSIMAGNDPGSSSIPLNDHPMTYIGAAKHFALKDMENATDNFDSARILGEGGFGIVYSGRLDDGREVAVKVLKRHNQHGIQEFLAEVEMLSRLHHRNLVKLIGICTEDRNRCLVYELVPNGSVESHLHGIDKLTSRLDWDARLKVALGAARGLAYLHEDSNPRVIHRDFKASNILLECDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSLPPGQENLVAWARPLLTSKEGLDVITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCSEFEKLTDQFHNVTAETNLKGDKCRIIGIGFDQGQELVSCRWHSSNSKPSRIGRKKHLRQKQRSLTWLFCQVLAWISLVYVHPYHALQTLEVQSNCISEAFKLQARDLYVHCSLRIKTPDHSFTNN 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5938256 5944606 + CmaCh17G007250.1 Cma17g00725 312620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00725 857 PANTHER OS01G0750732 PROTEIN 48 796 - -
Cma17g00725 857 MobiDBLite consensus disorder prediction 111 176 - -
Cma17g00725 857 Pfam Protein tyrosine and serine/threonine kinase 457 727 IPR001245 GO:0004672|GO:0006468
Cma17g00725 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 576 588 IPR008271 GO:0004672|GO:0006468
Cma17g00725 857 SUPERFAMILY Protein kinase-like (PK-like) 433 727 IPR011009 -
Cma17g00725 857 MobiDBLite consensus disorder prediction 111 134 - -
Cma17g00725 857 MobiDBLite consensus disorder prediction 136 152 - -
Cma17g00725 857 ProSitePatterns Protein kinases ATP-binding region signature. 460 482 IPR017441 GO:0005524
Cma17g00725 857 Gene3D Phosphorylase Kinase; domain 1 425 529 - -
Cma17g00725 857 PANTHER OS01G0750732 PROTEIN 48 796 - -
Cma17g00725 857 ProSiteProfiles Protein kinase domain profile. 454 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00725 857 Gene3D Transferase(Phosphotransferase) domain 1 530 751 - -
Cma17g00725 857 CDD STKc_IRAK 460 728 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00773 Cma-Chr8:4659704 Cma17g00725 Cma-Chr17:5938256 8.51E-85 dispersed
Cma17g00725 Cma-Chr17:5938256 Cma19g00126 Cma-Chr19:744556 0 dispersed
Cma10g00720 Cma-Chr10:3251540 Cma17g00725 Cma-Chr17:5938256 0 wgd
Cma11g00695 Cma-Chr11:3381612 Cma17g00725 Cma-Chr17:5938256 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69239 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00725 - - csv:101219484 1291.17