Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00752 ATGAAGATTATGGAATTATCAGGGTTCCATTCCCTCTTTGGTTTTCTGCTATGTGGTCTAACTCTTCTATTGCTTGTTCAAGCTCAGGATCAGTCAGGCTTCATTAGTTTAGACTGTGGAACACCAGAGAGTACAAGTTACACAGAAACGACAACCAAGATCGACTATGTTTCTGATGCACCCTTCATAAACAGTGGTGTAAGTGGAAATGTAGCTTCGATTTATGGAGATATCTACCAAAGGCAAATGAGGAAACTCAGAAGCTTCCCCCAAGGAATCAGAAATTGTTACAATGTAAGCGTTAAAAGGGATACCAAATACTTGATTCGAGCAAGTTTCTTGTACGGGAATTACGATGGCCTGAATTTGCCACCGAACTTTGACCTCTATATTGGGAATAGCTTATGGGAAACAATAAACTTAACCAAAAATGGCATTGATGCTTTCAAAGATCTCATACATGTAACCTCCTCAAATGAAGTTCACATCTGTCTGATCAATAAAGGAAATGGGGTACCATTCATCTCAGCCTTGGAATTTAGACCTTTACTCAACGTTACTTATCAAACAGCGTCAGGATCCTTATCACTGTATTATCGATTGGACGTTGGTTCCACAAAAAATCAAACATACAGGTTCCCTTTTGATGTTTATGATCGCTTCTGGTCACCATTTAACTTCAATGAGTGGACACAAGTGAGCACCAATCAAACTGTAGATGCTATAGATCACAACAATCACCAACCGCCATCCATTGTCATGAAAACTGCTTCCTTCGCAACAAATGCAAGCAAACCACTGGAAATTTGGTGGGATACCGTAGATTCATCTCAATATTATGTATTTATCCACTTTGCGGAAGTTGTGGAGCTTAGAGGCAACCAGAGTAGAGGATTCAATATCATGCACAATGGGGATCATTTTTATGGACCTCTAATTCCGAGTTATTTATCCACACTGACCATTTACAGTCTAGAACCATTGGATGCAGCAGATAGACATACATTTTCCTTAATTCCAATTGAGAATGCAACACTTCCTCCAATCATTAATGCTTTCGAGATATATACAGTGAAGGATATATCAGAGTTAGCATCAGATAAAGGAGATGTGGATGCAATTACCAATATCAAGTCAACCTATGGGGTAAAAAAGGATTGGCAAGGAGATCCATGTGTGCCGATGAGATACCCCTGGAGTGGGTTAAATTGTAGCAATGAAGCTGCACCAAGAATCACATCCTTGAACTTGTCTACAAGTGGACTGAATGGTGAAATATCTTCTTACATATCCAATCTAACAATGTTGCAAACTTTGGACTTGTCAAACAATAATTTGACAGGGAAGGTGCCTGATTTCCTGTCTAGTTTGTTGCACCTCAAACTTCTGAACCTAGGTAACAATAACCTCTCAGGTCCAATACCGGCTGATCTTTTGAAAAGATCCAATGATGGCTCACTATCATTAAGTCACAATCTAAGTCAAACTTATCTAGCCATGAATGGTACCGATTTCAGTGTGGGAGGAAACCAAAATCTCGATGGATGTACATCAGATCCATGTCCAAAGAATGAAAAGAAAAACAACATCATCATTCCAATTGTAGCATCAATTGGTGGAGTCCTAGTTATCGCCACAATTGCTGCAATAACCTTTTGGATCATCAAATCTCGAAAGAAACCACAAGGTAAAAATGTTGTCTCAGTAGTGGATAAGTCAGAAACCAACAGTCAATTTGGTAATTCGTTGGAGGTGAGAAGACAACAATTTACATATTCTGAGGTGGTGAAAATGACCAACAATTTCACAAGAGTTCTGGGTAAAGGAGGTTTTGGGGAGGTTACCCTTCTTATGAGAGTTCATCATAGAAACTTGACAAGCCTAGTTGGATATTTGAATGAAGGAAACCACCTGGGCCTCATTTACGAGTACATGGCCAATGGCGATTTAGCAGAACAACTTTCAGAGAGGAGTCCAAGTATCCTAAATTGGGAAGATAGACTTCGAATAGCAATGGATGCAGCTCAAGGACTGGAGTACCTGCATTACGGTTGTAAGCCACCAATTGTTCACAGAGATGTGAAAACAACAAACATCTTGTTGACAGATAATTTCCAAGGCAAACTTGCCGATTTCGGTCTTTCCAAAAGCTTTCCCATCGATGGCAACACCCACATGTCGACGGTTGTCGCTGGCACACCTGGTTACCTTGATCCAGAGTACTACGTATCAAACAGACTAACAGAGAAAAGCGATGTATACAGCTTTGGGATAGCTCTATTAGAGATAATCAGTTGCAAACCAGTAATATCAAGAACCGGAGTTACACCACATATAGCTAAATGGGCTACATCTTTGCTGGCACAAGGAGATATTCAGAGCATTGTCGATCCAAGATTACAAGGGCAATATGACACTAACTCTGTTTGGAAGACGGCGGAAGTGGCAATGGCTTGTGTAGCGGCAAATTCCAGTAGAAGGCCAACAATGAACGACGTTGTGGCAGAACTCAAAGATTGCTTAGCCATGGAATTGAGTCGAAAGATTGAGAATCGTTCGCTTGTTTCAATAAATTCCATCCAATCGAGGCCCATCTCCACTGTGGGGTTCAGTGGTACCGATTCTGGTCCCATGGCGAGGTGA 2643 40.79 MKIMELSGFHSLFGFLLCGLTLLLLVQAQDQSGFISLDCGTPESTSYTETTTKIDYVSDAPFINSGVSGNVASIYGDIYQRQMRKLRSFPQGIRNCYNVSVKRDTKYLIRASFLYGNYDGLNLPPNFDLYIGNSLWETINLTKNGIDAFKDLIHVTSSNEVHICLINKGNGVPFISALEFRPLLNVTYQTASGSLSLYYRLDVGSTKNQTYRFPFDVYDRFWSPFNFNEWTQVSTNQTVDAIDHNNHQPPSIVMKTASFATNASKPLEIWWDTVDSSQYYVFIHFAEVVELRGNQSRGFNIMHNGDHFYGPLIPSYLSTLTIYSLEPLDAADRHTFSLIPIENATLPPIINAFEIYTVKDISELASDKGDVDAITNIKSTYGVKKDWQGDPCVPMRYPWSGLNCSNEAAPRITSLNLSTSGLNGEISSYISNLTMLQTLDLSNNNLTGKVPDFLSSLLHLKLLNLGNNNLSGPIPADLLKRSNDGSLSLSHNLSQTYLAMNGTDFSVGGNQNLDGCTSDPCPKNEKKNNIIIPIVASIGGVLVIATIAAITFWIIKSRKKPQGKNVVSVVDKSETNSQFGNSLEVRRQQFTYSEVVKMTNNFTRVLGKGGFGEVTLLMRVHHRNLTSLVGYLNEGNHLGLIYEYMANGDLAEQLSERSPSILNWEDRLRIAMDAAQGLEYLHYGCKPPIVHRDVKTTNILLTDNFQGKLADFGLSKSFPIDGNTHMSTVVAGTPGYLDPEYYVSNRLTEKSDVYSFGIALLEIISCKPVISRTGVTPHIAKWATSLLAQGDIQSIVDPRLQGQYDTNSVWKTAEVAMACVAANSSRRPTMNDVVAELKDCLAMELSRKIENRSLVSINSIQSRPISTVGFSGTDSGPMAR 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6087515 6091815 - CmaCh17G007520.1 Cma17g00752 312647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00752 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Cma17g00752 880 Pfam Protein tyrosine and serine/threonine kinase 592 837 IPR001245 GO:0004672|GO:0006468
Cma17g00752 880 Gene3D Transferase(Phosphotransferase) domain 1 646 860 - -
Cma17g00752 880 Gene3D Phosphorylase Kinase; domain 1 595 645 - -
Cma17g00752 880 SUPERFAMILY Protein kinase-like (PK-like) 580 837 IPR011009 -
Cma17g00752 880 ProSiteProfiles Protein kinase domain profile. 568 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00752 880 PANTHER OS07G0107800 PROTEIN-RELATED 17 614 - -
Cma17g00752 880 ProSiteProfiles Leucine-rich repeat profile. 435 457 IPR001611 GO:0005515
Cma17g00752 880 PANTHER OS07G0107800 PROTEIN-RELATED 613 880 - -
Cma17g00752 880 SMART serkin_6 600 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00752 880 Pfam Malectin-like domain 37 358 IPR024788 -
Cma17g00752 880 Gene3D Ribonuclease Inhibitor 371 492 IPR032675 -
Cma17g00752 880 SUPERFAMILY L domain-like 395 495 - -
Cma17g00752 880 PANTHER PUTATIVE-RELATED 613 880 - -
Cma17g00752 880 PANTHER PUTATIVE-RELATED 17 614 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00037 Cma-Chr8:187872 Cma17g00752 Cma-Chr17:6087515 1.91E-10 dispersed
Cma08g00744 Cma-Chr8:4467063 Cma17g00752 Cma-Chr17:6087515 1.64E-86 dispersed
Cma08g00746 Cma-Chr8:4478596 Cma17g00752 Cma-Chr17:6087515 0 dispersed
Cma08g00750 Cma-Chr8:4500042 Cma17g00752 Cma-Chr17:6087515 4.05E-105 dispersed
Cma08g00751 Cma-Chr8:4506956 Cma17g00752 Cma-Chr17:6087515 2.34E-84 dispersed
Cma14g01283 Cma-Chr14:10139982 Cma17g00752 Cma-Chr17:6087515 0 dispersed
Cma17g00747 Cma-Chr17:6069928 Cma17g00752 Cma-Chr17:6087515 0 dispersed
Cma17g00749 Cma-Chr17:6080653 Cma17g00752 Cma-Chr17:6087515 7.76E-32 dispersed
Cma17g00752 Cma-Chr17:6087515 Cma17g00477 Cma-Chr17:2934076 8.32E-149 dispersed
Cma17g00752 Cma-Chr17:6087515 Cma17g00755 Cma-Chr17:6099291 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69242 PF12819 Malectin_like 5.20E-110 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00752 - - csv:101206211 1396.33