Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00758 ATGTCGTGGCAAACGTATGTCGACGATCACCTTATGTGTGAGATTGAAGGCAACCATCTCACCTCCGCCGCCATCATTGGACACGACGGTAGTGTTTGGGCGCAGAGTGCCTCATTCCCTCAGTTTAAGCCGGAGGAGATTTCGGCGATTATGAAGGATTTTGATGAGCCTGGTTCTCTTGCCCCAACTGGTTTACACCTTGGTGGCACTAAGTACATGGTTATCCAGGGAGAGCCTGGAGCTGTTGTTCGTGGGAAAAAGGGCGCTGGCGGAGTTACTGTGAAGAAAACTGAGAAAGCTATGATTGTTGGAATCTATGATGAACCTGTAACTCCGGGACAATGCAATATGGTTGTTGAAAGGTTGGGAGATTACCTGATCGAACAGGGTTTGTAA 396 48.48 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSASFPQFKPEEISAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVVRGKKGAGGVTVKKTEKAMIVGIYDEPVTPGQCNMVVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6120509 6122555 + CmaCh17G007580.1 Cma17g00758 312653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00758 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Cma17g00758 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cma17g00758 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Cma17g00758 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Cma17g00758 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cma17g00758 131 SMART prof_2 1 131 IPR005455 GO:0003779
Cma17g00758 131 CDD PROF 2 130 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Cma17g00758 131 PANTHER PROFILIN 1 131 - -
Cma17g00758 131 Pfam Profilin 1 130 IPR005455 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00758 K05759 PFN; profilin - pop:7475105 246.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00091 Cma17g00758 CCT
Cma01g00091 Cma17g00758 ECH
Cma08g00743 Cma17g00758 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01274 Cma-Chr12:9918513 Cma17g00758 Cma-Chr17:6120509 1.07E-77 dispersed
Cma01g00091 Cma-Chr1:420491 Cma17g00758 Cma-Chr17:6120509 1.11E-65 wgd
Cma14g01287 Cma-Chr14:10164737 Cma17g00758 Cma-Chr17:6120509 1.96E-69 wgd
Cma17g00758 Cma-Chr17:6120509 Cma08g00743 Cma-Chr8:4459692 2.05E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g263 . . . . . . . . Cmo08g00707 Cmo17g00727 Cma01g00091 . Car01g00075 Car14g01139 Sed06g2183 Cpe12g00643 Cpe17g00524 Bhi01g03373 Tan04g2694 Cmetu04g1863 Lac11g0782 Hepe02g1450 . . Cla07g01272 Cam07g1227 Cec07g1455 Cco07g1416 Clacu07g1338 Cmu07g1316 Cre07g1699 . Cone17ag0127 . . Lsi02g02980 . Chy04g00956 . . . . . . . . . . Cmo01g00092 Cmo14g01321 Cma08g00743 Cma17g00758 Car08g00630 Car17g00703 Cpe02g01699 Cpe03g01090 Bhi09g00471 . . . . . . Cla09g00022 Cam09g0024 . Cco09g0025 . . . Lsi07g00531 Csa03g02348 . Cme04g01148
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT2G37620 96.3 7.9e-215 743.4
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 1.1e-213 739.6
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT2G37620 96.3 1.5e-213 739.2
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT2G37620 95.8 1.3e-212 736.1
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.8e-212 734.9
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.8e-212 734.9
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT2G37620 95.2 2.8e-212 734.9
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT2G37620 95.5 3.7e-212 734.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 4.8e-212 734.2
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.8e-212 734.2
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT2G37620 96.2 2.9e-209 724.9
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT2G37620 93.2 1.9e-200 695.7
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.8 8.7e-214 740.0
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT5G59370 96.3 3.3e-213 738.0
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT5G59370 96.6 4.3e-213 737.6
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT5G59370 96.3 1.6e-212 735.7
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 2.2e-212 735.3
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT5G59370 95.8 3.7e-212 734.6
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 8.2e-212 733.4
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT5G59370 95.8 5.3e-211 730.7
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.2e-210 729.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 1.2e-210 729.6
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT5G59370 96.0 7.2e-208 720.3
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT5G59370 94.3 5.9e-202 700.7
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT3G46520 97.1 3.9e-214 741.1
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT3G46520 96.6 1.5e-213 739.2
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT3G46520 96.8 1.9e-213 738.8
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT3G46520 96.6 7.4e-213 736.9
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 9.7e-213 736.5
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT3G46520 96.0 1.6e-212 735.7
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 3.7e-212 734.6
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT3G46520 96.0 2.4e-211 731.9
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.3e-211 730.7
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 5.3e-211 730.7
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT3G46520 95.7 2.1e-207 718.8
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT3G46520 94.6 2.6e-202 701.8
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT3G12110 96.8 4.6e-215 744.2
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 3.9e-214 741.1
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT3G12110 96.8 3.9e-214 741.1
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT3G12110 96.6 8.7e-214 740.0
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 8.7e-214 740.0
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.3 8.7e-214 740.0
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT3G12110 96.6 1.1e-213 739.6
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.3e-213 737.6
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.7e-212 734.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 8.2e-212 733.4
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT3G12110 96.0 3.8e-209 724.5
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT3G12110 93.5 2.9e-201 698.4
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.4e-208 722.6
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT3G18780 92.0 3.2e-208 721.5
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT3G18780 91.8 5.5e-208 720.7
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT3G18780 91.8 7.2e-208 720.3
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT3G18780 91.8 9.4e-208 719.9
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.6e-207 719.2
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.6e-207 719.2
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 91.5 2.1e-207 718.8
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 1.4e-206 716.1
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.2 3.0e-206 714.9
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT3G18780 91.4 1.2e-202 703.0
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT3G18780 90.3 1.5e-197 686.0
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.0e-209 724.2
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT1G49240 92.3 1.1e-208 723.0
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT1G49240 92.0 2.5e-208 721.8
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT1G49240 92.0 3.2e-208 721.5
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 5.5e-208 720.7
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.5e-208 720.7
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 91.8 7.2e-208 720.3
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT1G49240 91.5 1.2e-207 719.5
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 3.0e-206 714.9
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT1G49240 91.0 6.7e-206 713.8
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT1G49240 91.1 2.6e-202 701.8
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT1G49240 90.3 1.5e-197 686.0
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.1e-215 743.8
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.9e-214 741.1
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT5G09810 95.2 1.3e-212 736.1
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.5 2.8e-212 734.9
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT5G09810 95.8 3.7e-212 734.6
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT5G09810 95.8 4.8e-212 734.2
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT5G09810 95.5 6.3e-212 733.8
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.2e-212 733.4
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 1.4e-211 732.6
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 95.0 4.1e-211 731.1
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT5G09810 95.1 1.2e-207 719.5
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT5G09810 93.0 5.5e-200 694.1
Cma17g00758 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT2G19760 76.3 3.1e-57 218.4
Cma12g01274 . 162 292 Cytoskeleton Gene Families AT2G19760 77.1 3.1e-57 218.4
Cma05g01374 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 3.4e-56 214.9
Cma08g00743 CCT,CST,ECH 135 264 Cytoskeleton Gene Families AT2G19760 73.8 1.7e-55 212.6
Cma14g01287 . 1077 1205 Cytoskeleton Gene Families AT2G19760 73.6 5.5e-54 207.6
Cma05g01373 CST 1 128 Cytoskeleton Gene Families AT2G19760 71.1 2.0e-48 189.1
Cma01g00091 CCT,ECH 1 179 Cytoskeleton Gene Families AT2G19760 52.5 5.5e-46 181.0
Cma17g00758 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 76.3 9.0e-57 216.9
Cma12g01274 . 162 292 Cytoskeleton Gene Families AT4G29350 76.3 2.6e-56 215.3
Cma05g01374 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 1.4e-54 209.5
Cma08g00743 CCT,CST,ECH 135 263 Cytoskeleton Gene Families AT4G29350 72.9 1.2e-53 206.5
Cma14g01287 . 1077 1207 Cytoskeleton Gene Families AT4G29350 71.8 1.3e-52 203.0
Cma05g01373 CST 1 128 Cytoskeleton Gene Families AT4G29350 70.3 4.9e-47 184.5
Cma01g00091 CCT,ECH 1 181 Cytoskeleton Gene Families AT4G29350 50.3 2.3e-44 175.6
Cma12g01274 . 1 133 Cytoskeleton Gene Families AT4G29340 85.1 5.9e-64 240.7
Cma05g01374 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 3.9e-63 238.0
Cma17g00758 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.9 4.4e-59 224.6
Cma08g00743 CCT,CST,ECH 135 263 Cytoskeleton Gene Families AT4G29340 76.5 1.4e-57 219.5
Cma14g01287 . 1077 1207 Cytoskeleton Gene Families AT4G29340 70.1 1.1e-52 203.4
Cma05g01373 CST 1 128 Cytoskeleton Gene Families AT4G29340 64.9 1.9e-46 182.6
Cma01g00091 CCT,ECH 1 181 Cytoskeleton Gene Families AT4G29340 51.1 5.6e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00758 Cma_Chr17 FPKM 9.754067 11.525468 0.264681 0.913464 1.116697 0.84842 0.694218 7.132876 7.530385 8.338256