Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00758 ATGTCGTGGCAAACGTATGTCGACGATCACCTTATGTGTGAGATTGAAGGCAACCATCTCACCTCCGCCGCCATCATTGGACACGACGGTAGTGTTTGGGCGCAGAGTGCCTCATTCCCTCAGTTTAAGCCGGAGGAGATTTCGGCGATTATGAAGGATTTTGATGAGCCTGGTTCTCTTGCCCCAACTGGTTTACACCTTGGTGGCACTAAGTACATGGTTATCCAGGGAGAGCCTGGAGCTGTTGTTCGTGGGAAAAAGGGCGCTGGCGGAGTTACTGTGAAGAAAACTGAGAAAGCTATGATTGTTGGAATCTATGATGAACCTGTAACTCCGGGACAATGCAATATGGTTGTTGAAAGGTTGGGAGATTACCTGATCGAACAGGGTTTGTAA 396 48.48 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSASFPQFKPEEISAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVVRGKKGAGGVTVKKTEKAMIVGIYDEPVTPGQCNMVVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6120509 6122555 + CmaCh17G007580.1 Cma17g00758 312653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00758 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Cma17g00758 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cma17g00758 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Cma17g00758 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Cma17g00758 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cma17g00758 131 SMART prof_2 1 131 IPR005455 GO:0003779
Cma17g00758 131 CDD PROF 2 130 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cma17g00758 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Cma17g00758 131 PANTHER PROFILIN 1 131 - -
Cma17g00758 131 Pfam Profilin 1 130 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00091 Cma17g00758 CCT
Cma01g00091 Cma17g00758 ECH
Cma08g00743 Cma17g00758 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01274 Cma-Chr12:9918513 Cma17g00758 Cma-Chr17:6120509 1.07E-77 dispersed
Cma01g00091 Cma-Chr1:420491 Cma17g00758 Cma-Chr17:6120509 1.11E-65 wgd
Cma14g01287 Cma-Chr14:10164737 Cma17g00758 Cma-Chr17:6120509 1.96E-69 wgd
Cma17g00758 Cma-Chr17:6120509 Cma08g00743 Cma-Chr8:4459692 2.05E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00758 K05759 - pop:7475105 246.514