Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00759 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTACTAGGGATCAAGAAAGAGAAGGACCCATCTCGGAATTTGAATTCAAATTCAACGGCGGTTGTTGGTGACAAAAAGGAGAAGAAACGGTGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAATACAGCCTCCGGTGGAGGCGACTTGGTTTAGATCCTACATTTCTGATTCAGAGAAAGAGCAGAATAGGCACGCAATTGCGGTGGCTGCTGCTACCGCTGCTGCAGCTGACGCCGCTGTTGCAGCGGCTCAGGCGGCGGCGGCCGTCGTCCGGCTGACAAGCCAAGGCAGAAGCTCTGTGTCTGTCACCGGAAGAGATAGATGGGCGGCGGTGAAGATTCAAACAGTTTTTAGAGGCTATTTGGCTAGAAAGGCGCTTCGAGCTCTCAAAGGGCTCGTTAAATTGCAGGCTGTGATTAGAGGATTTCTCGTAAGAAAACGAGCCGCTGCAACTCTTCACAGTATGCAGGTTCTTTTTAGAGCTCAAACTGCAATTAGGACACAAAGAGCTCGTCGATCTTTCAACAAAGAGAATCGGTTTATCCCCGAGATTCGACCCCGAAAATCTGCAGAACGGTTCGATGAAACAAGGAGTGAATTCCATAGCAAGAGGTTATCGGAAACACCCTCCATGAATTCAATGGATGAGAGCCCAAAAATCGTGGAAATCGACACCTACCGAACTCGATCATCGAGGTCACGTCGATACATTTCCGCATTCTCCGAATGCGGAGGAGACGATGTAGCTATCTCATCTTCACCATTGCCATGTTTGAATCGACCTTGCATCATCGATTACCACAACAACATGGTTCAAGACTTCGAATGGTGTTTGATGGGCGAAGACTGCAAGTTTCCTACAGCGCACAGCACGCCACGACTATCGAACAATTCATTCGCCTCGACCAACATGCTGGTCACGCCATCGAAGAGCGTGTGCGGGGACAGCTTCTTTAGGCCATACATGAACTACTACCCGAATTACATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCACAAAGTGCACCAAAGCAAAGGCCAGAGCCTGGGTCAAAGAAGAAGCTGTCATTGAATGAAGTAATGGCAGCAAGGAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGCAACCAAATGGTTCAAATGGTGGAAGAAGAAGAAGAACAAATTATGGGGTTTGAGTGA 1227 48.57 MGKATRWLKGLLGIKKEKDPSRNLNSNSTAVVGDKKEKKRWSFAKSGRDSGQIQPPVEATWFRSYISDSEKEQNRHAIAVAAATAAAADAAVAAAQAAAAVVRLTSQGRSSVSVTGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVIRGFLVRKRAAATLHSMQVLFRAQTAIRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSETPSMNSMDESPKIVEIDTYRTRSSRSRRYISAFSECGGDDVAISSSPLPCLNRPCIIDYHNNMVQDFEWCLMGEDCKFPTAHSTPRLSNNSFASTNMLVTPSKSVCGDSFFRPYMNYYPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEVMAARNSLSSVRMQRPSNQMVQMVEEEEEQIMGFE 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6124935 6127287 - CmaCh17G007590.1 Cma17g00759 312654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00759 408 MobiDBLite consensus disorder prediction 201 216 - -
Cma17g00759 408 MobiDBLite consensus disorder prediction 201 227 - -
Cma17g00759 408 Gene3D - 116 168 - -
Cma17g00759 408 SMART iq_5 117 139 IPR000048 GO:0005515
Cma17g00759 408 SMART iq_5 140 161 IPR000048 GO:0005515
Cma17g00759 408 PANTHER IQ-DOMAIN 5-RELATED 1 391 - -
Cma17g00759 408 ProSiteProfiles IQ motif profile. 142 168 IPR000048 GO:0005515
Cma17g00759 408 Pfam IQ calmodulin-binding motif 145 159 IPR000048 GO:0005515
Cma17g00759 408 Pfam IQ calmodulin-binding motif 119 139 IPR000048 GO:0005515
Cma17g00759 408 MobiDBLite consensus disorder prediction 351 370 - -
Cma17g00759 408 MobiDBLite consensus disorder prediction 18 37 - -
Cma17g00759 408 Pfam Protein of unknown function (DUF4005) 303 386 IPR025064 -
Cma17g00759 408 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Cma17g00759 408 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 391 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g01288 Cma17g00759 CCT
Cma01g00093 Cma17g00759 CCT
Cma14g01288 Cma17g00759 ECH
Cma01g00093 Cma17g00759 ECH
Cma08g00741 Cma17g00759 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01742 Cma-Chr14:12751382 Cma17g00759 Cma-Chr17:6124935 7.18E-42 dispersed
Cma17g00759 Cma-Chr17:6124935 Cma17g00215 Cma-Chr17:1108378 4.13E-27 dispersed
Cma01g00093 Cma-Chr1:425355 Cma17g00759 Cma-Chr17:6124935 1.99E-71 wgd
Cma10g00673 Cma-Chr10:3057232 Cma17g00759 Cma-Chr17:6124935 1.99E-103 wgd
Cma11g00652 Cma-Chr11:3171146 Cma17g00759 Cma-Chr17:6124935 8.75E-103 wgd
Cma14g01288 Cma-Chr14:10183858 Cma17g00759 Cma-Chr17:6124935 1.52E-94 wgd
Cma17g00759 Cma-Chr17:6124935 Cma08g00741 Cma-Chr8:4454707 1.95E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00759 - - csv:101204536 552.747